PDB entry 6ifc

View 6ifc on RCSB PDB site
Description: crystal structure of vapbc from salmonella typhimurium
Deposited on 2018-09-19, released 2020-01-29
The last revision was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: tRNA(fMet)-specific endonuclease VapC
  Species: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) [TaxId:99287]
  Gene: vapC, STM3033
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8ZM86 (0-131)
• Chain 'B':
  Compound: Antitoxin VapB
  Species: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) [TaxId:99287]
  Gene: vapB, STM3034
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q7CPV2 (0-21)
• Chain 'C':
  Compound: tRNA(fMet)-specific endonuclease VapC
  Species: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) [TaxId:99287]
  Gene: vapC, STM3033
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8ZM86 (0-131)
• Chain 'D':
  Compound: Antitoxin VapB
  Species: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) [TaxId:99287]
  Gene: vapB, STM3034
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q7CPV2 (Start-28)
• Chain 'E':
  Compound: tRNA(fMet)-specific endonuclease VapC
  Species: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) [TaxId:99287]
  Gene: vapC, STM3033
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8ZM86 (0-131)
• Chain 'F':
  Compound: Antitoxin VapB
  Species: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) [TaxId:99287]
  Gene: vapB, STM3034
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q7CPV2 (0-21)
• Chain 'G':
  Compound: tRNA(fMet)-specific endonuclease VapC
  Species: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) [TaxId:99287]
  Gene: vapC, STM3033
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8ZM86 (0-131)
• Chain 'H':
  Compound: Antitoxin VapB
  Species: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) [TaxId:99287]
  Gene: vapB, STM3034
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q7CPV2 (Start-28)
• Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifcA (A:)
  mlkfmldtntciftiknkpehirerfnlntsrmcissitlmeliygaekslapernlavv
  egfisrlevldydtqaaihtgqiraelarkgtpvgpydqmiaghagsrglvvvtnnlref
  eripgiriedwc
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifcB (B:)
  swdswfdgegastdfmstreqp
  

  
  
• Chain 'C':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifcC (C:)
  mlkfmldtntciftiknkpehirerfnlntsrmcissitlmeliygaekslapernlavv
  egfisrlevldydtqaaihtgqiraelarkgtpvgpydqmiaghagsrglvvvtnnlref
  eripgiriedwc
  

  
  
• Chain 'D':
  Sequence, based on SEQRES records:
  

  >6ifcD (D:)
  iitpvgeswdswfdgegastdfmstreqp
  

  
  Sequence, based on observed residues (ATOM records):
  

  >6ifcD (D:)
  itpvgeswdswfdgegastdfmstreqp
  

  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifcE (E:)
  mlkfmldtntciftiknkpehirerfnlntsrmcissitlmeliygaekslapernlavv
  egfisrlevldydtqaaihtgqiraelarkgtpvgpydqmiaghagsrglvvvtnnlref
  eripgiriedwc
  

  
  
• Chain 'F':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifcF (F:)
  swdswfdgegastdfmstreqp
  

  
  
• Chain 'G':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifcG (G:)
  mlkfmldtntciftiknkpehirerfnlntsrmcissitlmeliygaekslapernlavv
  egfisrlevldydtqaaihtgqiraelarkgtpvgpydqmiaghagsrglvvvtnnlref
  eripgiriedwc
  

  
  
• Chain 'H':
  Sequence, based on SEQRES records:
  

  >6ifcH (H:)
  iitpvgeswdswfdgegastdfmstreqp
  

  
  Sequence, based on observed residues (ATOM records):
  

  >6ifcH (H:)
  itpvgeswdswfdgegastdfmstreqp