PDB entry 6ieq

View 6ieq on RCSB PDB site
Description: crystal structure of hiv-1 env conm sosip.v7 in complex with bnab pgt124 and 35o22
Deposited on 2018-09-16, released 2019-05-22
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IEQ (Start-152)
  • Chain 'D':
    Compound: 35O22 Fab Heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IEQ (0-End)
  • Chain 'E':
    Compound: 35O22 Fab Light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IEQ
  • Chain 'G':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IEQ
  • Chain 'H':
    Compound: PGT124 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IEQ (0-End)
  • Chain 'L':
    Compound: PGT124 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IEQ
  • Heterogens: NAG, MAN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ieqB (B:)
avgigavflgflgaagstmgaasmtltvqarnllsgivqqqsnllrapecqqhllqltvw
gikqlqarvlaverylkdqqllgiwgcsgklicctnvpwnsswsnksqdeiwdnmtwmew
dkeinnytdiiyslieesqnqqekneqellald

    Sequence, based on observed residues (ATOM records):
    >6ieqB (B:)
gflgaagstmgaasmtltvqarnllsgivqqqlqltvwgikqlqarvlaverylkdqqll
giwgcsgklicctnvpwnsswsnksqdeiwdnmtwmewdkeinnytdiiyslieesqnqq
ekneqellald

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ieqD (D:)
egqlvqsgaelkkpgasvkiscktsgyrfnfyhinwirqtagrgpewmgwispysgdknl
apafqdrvimttdtevpvtsftstgaaymeirnlkfddtgtyfcakgllrdgsstwlpyl
wgqgtlltvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsg
vhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdkglev

    Sequence, based on observed residues (ATOM records):
    >6ieqD (D:)
egqlvqsgaelkkpgasvkiscktsgyrfnfyhinwirqtagrgpewmgwispysgdknl
apafqdrvimttdtevpvtsftstgaaymeirnlkfddtgtyfcakgllrdgsstwlpyl
wgqgtlltvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsg
vhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrv

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ieqE (E:)
qsvltqsasvsgslgqsvtisctgpnsvccshksiswyqwppgraptliiyednerapgi
sprfsgyksywsayltisdlrpedettyyccsythnsgcvfgtgtkvsvlgqskanpsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records):
    >6ieqE (E:)
svltqsasvsgslgqsvtisctgpnsvccshksiswyqwppgraptliiyednerapgis
prfsgyksywsayltisdlrpedettyyccsythnsgcvfgtgtkvsvlgqskanpsvtl
fppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassy
lsltpeqwkshrsyscqvthegstvektvapte

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6ieqG (G:)
mdamkrglccvlllcgavfvspsqeiharfrrgaraenlwvtvyygvpvwkdaettlfca
sdakaydtekrnvwathccvptdpnpqeivlenvtenfnmwknnmveqmhtdiislwdqs
lkpcvkltplcvtlnctdvnatnnttnneeikncsfnittelrdkkkkvyalfykldvvp
iddnnsxyrlincntsaitqacpkvsfepipihycapagfailkcndkkfngtgpcknvs
tvqcthgikpvvstqlllngslaeeeiiirsenitnnaktiivqlnesveinctrpnnnt
rksirixxgpgqwfyatgdiigdirqahcnisrtkwnktlqqvakklrehfnxxktiifn
pssggdleitthsfncggeffycntselfnstwngtnntitlpcrikqiinmwqrvgqam
yappiegkirctsnitgllltrdggnnntetfrpgggdmrdnwrselykykvvkieplgv
aptrckrrvverrrrrr

    Sequence, based on observed residues (ATOM records):
    >6ieqG (G:)
enlwvtvyygvpvwkdaettlfcasdakaydtekrnvwathccvptdpnpqeivlenvte
nfnmwknnmveqmhtdiislwdqslkpcvkltplcvtlnctdvnatnnteeikncsfnit
telrdkkkkvyalfykldvvpiddnnsyrlincntsaitqacpkvsfepipihycapagf
ailkcndkkfngtgpcknvstvqcthgikpvvstqlllngslaeeeiiirsenitnnakt
iivqlnesveinctrpnnntrksirigpgqwfyatgdiigdirqahcnisrtkwnktlqq
vakklrehfnktiifnpssggdleitthsfncggeffycntselfnsnntitlpcrikqi
inmwqrvgqamyappiegkirctsnitgllltrdgnnntetfrpgggdmrdnwrselyky
kvvkieplgvaptrckrrv

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6ieqH (H:)
qvqlqesgpglvrpsetlsvtcivsggsisnyywtwirqspgkglewigyisdretttyn
pslnsravisrdtsknqlslqlrsvttadtaiyfcatarrgqriygvvsfgeffyyyymd
vwgkgtavtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgalts
gvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscd

    Sequence, based on observed residues (ATOM records):
    >6ieqH (H:)
qvqlqesgpglvrpsetlsvtcivsggsisnyywtwirqspgkglewigyisdretttyn
pslnsravisrdtsknqlslqlrsvttadtaiyfcatarrgqriygvvsfgeffyyyymd
vwgkgtavtvssastkgpsvfplapssstsggtaalgclvkdyfpepvtvswnsgaltsg
vhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6ieqL (L:)
syvsplsvalgetariscgrqalgsravqwyqhkpgqapilliynnqdrpsgiperfsgt
pdinfgttatltisgvevgdeadyychmwdsrsgfswsfggatrltvlsqpkaapsvtlf
ppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyl
sltpeqwkshksyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records):
    >6ieqL (L:)
yvsplsvalgetariscgrqalgsravqwyqhkpgqapilliynnqdrpsgiperfsgtp
dinfgttatltisgvevgdeadyychmwdsrsgfswsfggatrltvlsqpkaapsvtlfp
psseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyls
ltpeqwkshksyscqvthegstvektvapt