PDB entry 6iep

View 6iep on RCSB PDB site
Description: gapdh of streptococcus agalactiae
Deposited on 2018-09-15, released 2019-01-02
The last revision was dated 2019-01-16, with a file datestamp of 2019-01-11.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Streptococcus agalactiae NEM316 [TaxId:211110]
    Gene: gbs1811
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Streptococcus agalactiae NEM316 [TaxId:211110]
    Gene: gbs1811
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Streptococcus agalactiae NEM316 [TaxId:211110]
    Gene: gbs1811
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Streptococcus agalactiae NEM316 [TaxId:211110]
    Gene: gbs1811
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8E3E8 (Start-335)
      • expression tag (336-337)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6iepA (A:)
mvvkvgingfgrigrlafrriqnvegvevtrindltdpnmlahllkydttqgrfdgtvev
keggfevngqfvkvsaerepanidwatdgveivleatgffaskekaeqhihengakkvvi
tapggndvktvvfntnhdildgtetvisgascttnclapmakalqdnfgvkqglmttiha
ytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvpvpt
gsvtelvatlekdvtveevnaamkaaandsygytedpivssdivgisygslfdatqtkvq
tvdgnqlvkvvswydnemsytsqlvrtleyfakiaklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6iepA (A:)
vvkvgingfgrigrlafrriqnvegvevtrindltdpnmlahllkydttqgrfdgtvevk
eggfevngqfvkvsaerepanidwatdgveivleatgffaskekaeqhihengakkvvit
apggndvktvvfntnhdildgtetvisgascttnclapmakalqdnfgvkqglmttihay
tgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvpvptg
svtelvatlekdvtveevnaamkaaandsygytedpivssdivgisygslfdatqtkvqt
vdgnqlvkvvswydnemsytsqlvrtleyfaki

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iepB (B:)
mvvkvgingfgrigrlafrriqnvegvevtrindltdpnmlahllkydttqgrfdgtvev
keggfevngqfvkvsaerepanidwatdgveivleatgffaskekaeqhihengakkvvi
tapggndvktvvfntnhdildgtetvisgascttnclapmakalqdnfgvkqglmttiha
ytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvpvpt
gsvtelvatlekdvtveevnaamkaaandsygytedpivssdivgisygslfdatqtkvq
tvdgnqlvkvvswydnemsytsqlvrtleyfakiaklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6iepB (B:)
vvkvgingfgrigrlafrriqnvegvevtrindltdpnmlahllkydttqgrfdgtvevk
eggfevngqfvkvsaerepanidwatdgveivleatgffaskekaeqhihegakkvvita
pggndvktvvfntnhdildgtetvisgascttnclapmakalqdnfgvkqglmttihayt
gdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvpvptgs
vtelvatlekdvtveevnaamkaaandsygytedpivssdivgisygslfdatqtkvqtv
dgnqlvkvvswydnemsytsqlvrtleyfaki

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iepC (C:)
mvvkvgingfgrigrlafrriqnvegvevtrindltdpnmlahllkydttqgrfdgtvev
keggfevngqfvkvsaerepanidwatdgveivleatgffaskekaeqhihengakkvvi
tapggndvktvvfntnhdildgtetvisgascttnclapmakalqdnfgvkqglmttiha
ytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvpvpt
gsvtelvatlekdvtveevnaamkaaandsygytedpivssdivgisygslfdatqtkvq
tvdgnqlvkvvswydnemsytsqlvrtleyfakiaklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6iepC (C:)
vvkvgingfgrigrlafrriqnvegvevtrindltdpnmlahllkydttqgrfdgtvevk
eggfevngqfvkvsaerepanidwatdgveivleatgffaskekaeqhihengakkvvit
apggndvktvvfntnhdildgtetvisgascttnclapmakalqdnfgvkqglmttihay
tgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvpvptg
svtelvatlekdvtveevnaamkaaandsygytedpivssdivgisygslfdatqtkvqt
vdgnqlvkvvswydnemsytsqlvrtleyfaki

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6iepD (D:)
mvvkvgingfgrigrlafrriqnvegvevtrindltdpnmlahllkydttqgrfdgtvev
keggfevngqfvkvsaerepanidwatdgveivleatgffaskekaeqhihengakkvvi
tapggndvktvvfntnhdildgtetvisgascttnclapmakalqdnfgvkqglmttiha
ytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvpvpt
gsvtelvatlekdvtveevnaamkaaandsygytedpivssdivgisygslfdatqtkvq
tvdgnqlvkvvswydnemsytsqlvrtleyfakiaklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6iepD (D:)
vvkvgingfgrigrlafrriqnvegvevtrindltdpnmlahllkydttqgrfdgtvevk
eggfevngqfvkvsaerepanidwatdgveivleatgffaskekaeqhihengakkvvit
apggndvktvvfntnhdildgtetvisgascttnclapmakalqdnfgvkqglmttihay
tgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvpvptg
svtelvatlekdvtveevnaamkaaandsygytedpivssdivgisygslfdatqtkvqt
vdgnqlvkvvswydnemsytsqlvrtleyfakiakle