PDB entry 6iek

View 6iek on RCSB PDB site
Description: Structure of RVFV Gn and human monoclonal antibody R12
Class: structural protein/immune system
Keywords: RVFV, antibody, STRUCTURAL PROTEIN, STRUCTURAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2018-09-14, released 2019-04-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-10, with a file datestamp of 2019-07-05.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NSmGnGc
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Heavy chain of Fab R12
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IEK (0-End)
    Domains in SCOPe 2.08: d6iekb_
  • Chain 'C':
    Compound: Light chain of Fab R12
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IEK (Start-218)
    Domains in SCOPe 2.08: d6iekc1, d6iekc2
  • Chain 'D':
    Compound: NSmGnGc
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Heavy chain of Fab R12
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IEK (0-End)
    Domains in SCOPe 2.08: d6ieke_
  • Chain 'F':
    Compound: Light chain of Fab R12
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IEK (Start-218)
    Domains in SCOPe 2.08: d6iekf1, d6iekf2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6iekB (B:)
qvqlvqsgaevkkpgasvkvsckvsgytltelsmhwvrqapgkglewmggfdredgetiy
aqkfqgrvtmtedtstdtaymelsslrsedtavyycaidpirynwnygdywgqgtlvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk

    Sequence, based on observed residues (ATOM records): (download) 
    >6iekB (B:)
qvqlvqsgaevkkpgasvkvsckvsgytltelsmhwvrqapgkglewmggfdredgetiy
aqkfqgrvtmtedtstdtaymelsslrsedtavyycaidpirynwnygdywgqgtlvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6iekC (C:)
lpvltqppsssaspgesarltctlpsdisvssyniywyqqkpgspprfllyyysdsdkgq
gsgvpsrfsgskdasdntgillisglqsedeadyycmiwpsnawvfgggtkltvlgqpka
apsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnk
yaassylsltpeqwkshrsyscqvthegstvektvapte

    Sequence, based on observed residues (ATOM records): (download) 
    >6iekC (C:)
pvltqppsssaspgesarltctlpsdisvssyniywyqqkpgspprfllyyysdsdkgqg
sgvpsrfsgskdasdntgillisglqsedeadyycmiwpsnawvfgggtkltvlgqpkaa
psvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnky
aassylsltpeqwkshrsyscqvthegstvektvapte

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6iekE (E:)
qvqlvqsgaevkkpgasvkvsckvsgytltelsmhwvrqapgkglewmggfdredgetiy
aqkfqgrvtmtedtstdtaymelsslrsedtavyycaidpirynwnygdywgqgtlvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdk

    Sequence, based on observed residues (ATOM records): (download) 
    >6iekE (E:)
qvqlvqsgaevkkpgasvkvsckvsgytltelsmhwvrqapgkglewmggfdredgetiy
aqkfqgrvtmtedtstdtaymelsslrsedtavyycaidpirynwnygdywgqgtlvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6iekF (F:)
lpvltqppsssaspgesarltctlpsdisvssyniywyqqkpgspprfllyyysdsdkgq
gsgvpsrfsgskdasdntgillisglqsedeadyycmiwpsnawvfgggtkltvlgqpka
apsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnk
yaassylsltpeqwkshrsyscqvthegstvektvapte

    Sequence, based on observed residues (ATOM records): (download) 
    >6iekF (F:)
pvltqppsssaspgesarltctlpsdisvssyniywyqqkpgspprfllyyysdsdkgqg
sgvpsrfsgskdasdntgillisglqsedeadyycmiwpsnawvfgggtkltvlgqpkaa
psvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnky
aassylsltpeqwkshrsyscqvthegstvektvapte