PDB entry 6ide

View 6ide on RCSB PDB site
Description: crystal structure of the vibrio cholera vqma-ligand-dna complex provides molecular mechanisms for drug design
Deposited on 2018-09-09, released 2019-01-16
The last revision was dated 2019-03-06, with a file datestamp of 2019-03-01.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcriptional regulator LuxR family
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Transcriptional regulator LuxR family
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA (5'-d(*ap*gp*gp*gp*gp*gp*gp*ap*ap*ap*tp*cp*cp*cp*cp*cp*cp*t)-3')
    Species: Vibrio cholerae, synthetic [TaxId:666]
  • Chain 'D':
    Compound: DNA (5'-d(*ap*gp*gp*gp*gp*gp*gp*ap*tp*tp*tp*cp*cp*cp*cp*cp*cp*t)-3')
    Species: Vibrio cholerae, synthetic [TaxId:666]
  • Heterogens: A1U, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ideA (A:)
mkpnhltleqislfkqlpgywgckdlnsvfvyanqaygeliglkraedcigrtdfempsp
taacaaefqqqdryvietghsvkvldihpypdghwhahiftktpwrdsqgkiqgtiffgq
dltdtailevghwvcratglststtfksvadrdtlkltaresevlflllygkkpqhiarv
mgisiktvegyeaklrskfgalskdqlidlaldrgfgsvipktllrkqlsvvlsdhtipk
kvdvvaqllehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ideA (A:)
pnhltleqislfkqlpgywgckdlnsvfvyanqaygeliglkraedcigrtdfempspta
acaaefqqqdryvietghsvkvldihpypdghwhahiftktpwrdsqgkiqgtiffgqdl
tdtailevghwvcratglsttlkltaresevlflllygkkpqhiarvmgisiktvegyea
klrskfgalskdqlidlaldrgfgsvipktllrkqlsvvlsdhtip

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ideB (B:)
mkpnhltleqislfkqlpgywgckdlnsvfvyanqaygeliglkraedcigrtdfempsp
taacaaefqqqdryvietghsvkvldihpypdghwhahiftktpwrdsqgkiqgtiffgq
dltdtailevghwvcratglststtfksvadrdtlkltaresevlflllygkkpqhiarv
mgisiktvegyeaklrskfgalskdqlidlaldrgfgsvipktllrkqlsvvlsdhtipk
kvdvvaqllehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ideB (B:)
pnhltleqislfkqlpgywgckdlnsvfvyanqaygeliglkraedcigrtdfempspta
acaaefqqqdryvietghsvkvldihpypdghwhahiftktpwrdsqgkiqgtiffgqdl
tdtailevghwvcratglststtftlkltaresevlflllygkkpqhiarvmgisiktve
gyeaklrskfgalskdqlidlaldrgfgsvipktllrkqlsvvlsdht

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.