PDB entry 6icm

View 6icm on RCSB PDB site
Description: pseudomonas putida cbb5 ndma with ferredoxin domain of ndmd
Deposited on 2018-09-06, released 2019-09-04
The last revision was dated 2019-09-25, with a file datestamp of 2019-09-20.
Experiment type: XRAY
Resolution: 2.96 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Methylxanthine N1-demethylase NdmA
    Species: Pseudomonas putida [TaxId:303]
    Gene: ndmA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Methylxanthine N1-demethylase NdmA
    Species: Pseudomonas putida [TaxId:303]
    Gene: ndmA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Methylxanthine N1-demethylase NdmA
    Species: Pseudomonas putida [TaxId:303]
    Gene: ndmA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Oxidoreductase NdmD
    Species: Pseudomonas putida [TaxId:303]
    Gene: ndmD
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FES, FE, PG4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6icmA (A:)
mgsshhhhhhenlyfqgsmeqaiindereylrhfwhpvctvtelekahpsslgplavkll
neqlvvaklgdeyvamrdrcahrsaklslgtvsgnrlqcpyhgwqydthgacqlvpacpn
spipnkakvdrfdceerygliwirldssfdcteipyfsaandprlriviqepywwdatae
rrwenftdfshfafihpgtlfdpnnaeppivpmdrfngqfrfvydtpedmavpnqapigs
fsytcsmpfainlevskysssslhvlfnvscpvdshttknflifareqsddsdylhiafn
dlvfaedkpviesqwpkdapadevsvvadkvsiqyrkwlrelkeahkegsqafrsalldp
viesdrsyi

    Sequence, based on observed residues (ATOM records):
    >6icmA (A:)
ndereylrhfwhpvctvtelekahpsslgplavkllneqlvvaklgdeyvamrdrcahrs
aklslgtvsgnrlqcpyhgwqydthgacqlvpacpnspipnkakvdrfdceerygliwir
ldssfdcteipyfsaandprlriviqepywwdataerrwenftdfshfafihpgtlfdpn
naeppivpmdrfngqfrfvydsfsytcsmpfainlevskysssslhvlfnvscpvdshtt
knflifareqsddsdylhiafndlvfaedkpviesqwpkdapadevsvvadkvsiqyrkw
lrelkeahkegsqafrsalldpviesdrsy

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6icmB (B:)
mgsshhhhhhenlyfqgsmeqaiindereylrhfwhpvctvtelekahpsslgplavkll
neqlvvaklgdeyvamrdrcahrsaklslgtvsgnrlqcpyhgwqydthgacqlvpacpn
spipnkakvdrfdceerygliwirldssfdcteipyfsaandprlriviqepywwdatae
rrwenftdfshfafihpgtlfdpnnaeppivpmdrfngqfrfvydtpedmavpnqapigs
fsytcsmpfainlevskysssslhvlfnvscpvdshttknflifareqsddsdylhiafn
dlvfaedkpviesqwpkdapadevsvvadkvsiqyrkwlrelkeahkegsqafrsalldp
viesdrsyi

    Sequence, based on observed residues (ATOM records):
    >6icmB (B:)
ndereylrhfwhpvctvtelekahpsslgplavkllneqlvvaklgdeyvamrdrcahrs
aklslgtvsgnrlqcpyhgwqydthgacqlvpacpnspipnkakvdrfdceerygliwir
ldssfdcteipyfsaandprlriviqepywwdataerrwenftdfshfafihpgtlfdpn
naeppivpmdrfngqfrfvydsfsytcsmpfainlevskysssslhvlfnvscpvdshtt
knflifareqsddsdylhiafndlvfaedkpviesqwpkdapadevsvvadkvsiqyrkw
lrelkeahkegsqafrsalldpviesdrsy

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6icmC (C:)
mgsshhhhhhenlyfqgsmeqaiindereylrhfwhpvctvtelekahpsslgplavkll
neqlvvaklgdeyvamrdrcahrsaklslgtvsgnrlqcpyhgwqydthgacqlvpacpn
spipnkakvdrfdceerygliwirldssfdcteipyfsaandprlriviqepywwdatae
rrwenftdfshfafihpgtlfdpnnaeppivpmdrfngqfrfvydtpedmavpnqapigs
fsytcsmpfainlevskysssslhvlfnvscpvdshttknflifareqsddsdylhiafn
dlvfaedkpviesqwpkdapadevsvvadkvsiqyrkwlrelkeahkegsqafrsalldp
viesdrsyi

    Sequence, based on observed residues (ATOM records):
    >6icmC (C:)
ndereylrhfwhpvctvtelekahpsslgplavkllneqlvvaklgdeyvamrdrcahrs
aklslgtvsgnrlqcpyhgwqydthgacqlvpacpnspipnkakvdrfdceerygliwir
ldssfdcteipyfsaandprlriviqepywwdataerrwenftdfshfafihpgtlfdpn
naeppivpmdrfngqfrfvydsfsytcsmpfainlevskysssslhvlfnvscpvdshtt
knflifareqsddsdylhiafndlvfaedkpviesqwpkdapadevsvvadkvsiqyrkw
lrelkeahkegsqafrsalldpviesdrsy

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6icmD (D:)
eyevelkktgqiftvspgstllqacldndvrieasceqgvcgtcitpvvsgdlehhdtyl
skkeresgkwimpcvsrckskkivldl