PDB entry 6ic3

View 6ic3 on RCSB PDB site
Description: al amyloid fibril from a lambda 1 light chain
Deposited on 2018-12-02, released 2019-04-03
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lambda 1 light chain fragment, residues 3-118
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IC3 (12-102)
  • Chain 'B':
    Compound: lambda 1 light chain fragment, residues 3-118
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IC3 (12-102)
  • Chain 'C':
    Compound: lambda 1 light chain fragment, residues 3-118
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IC3 (12-102)
  • Chain 'D':
    Compound: lambda 1 light chain fragment, residues 3-118
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IC3 (12-102)
  • Chain 'E':
    Compound: lambda 1 light chain fragment, residues 3-118
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IC3 (12-102)
  • Chain 'F':
    Compound: lambda 1 light chain fragment, residues 3-118
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IC3 (12-102)
  • Chain 'G':
    Compound: lambda 1 light chain fragment, residues 3-118
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IC3 (12-102)
  • Chain 'H':
    Compound: lambda 1 light chain fragment, residues 3-118
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IC3 (12-102)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ic3A (A:)
vltqppsasgtpgqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdr
fsgsksgtsaslavsglqsedeadyycaawdatlnawvfgggtkltvlsqpkaaps

    Sequence, based on observed residues (ATOM records):
    >6ic3A (A:)
gqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdrfsgsksgtsasl
avsglqsedeadyycaawdatlnawvfgggt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ic3B (B:)
vltqppsasgtpgqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdr
fsgsksgtsaslavsglqsedeadyycaawdatlnawvfgggtkltvlsqpkaaps

    Sequence, based on observed residues (ATOM records):
    >6ic3B (B:)
gqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdrfsgsksgtsasl
avsglqsedeadyycaawdatlnawvfgggt

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ic3C (C:)
vltqppsasgtpgqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdr
fsgsksgtsaslavsglqsedeadyycaawdatlnawvfgggtkltvlsqpkaaps

    Sequence, based on observed residues (ATOM records):
    >6ic3C (C:)
gqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdrfsgsksgtsasl
avsglqsedeadyycaawdatlnawvfgggt

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ic3D (D:)
vltqppsasgtpgqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdr
fsgsksgtsaslavsglqsedeadyycaawdatlnawvfgggtkltvlsqpkaaps

    Sequence, based on observed residues (ATOM records):
    >6ic3D (D:)
gqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdrfsgsksgtsasl
avsglqsedeadyycaawdatlnawvfgggt

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ic3E (E:)
vltqppsasgtpgqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdr
fsgsksgtsaslavsglqsedeadyycaawdatlnawvfgggtkltvlsqpkaaps

    Sequence, based on observed residues (ATOM records):
    >6ic3E (E:)
gqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdrfsgsksgtsasl
avsglqsedeadyycaawdatlnawvfgggt

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ic3F (F:)
vltqppsasgtpgqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdr
fsgsksgtsaslavsglqsedeadyycaawdatlnawvfgggtkltvlsqpkaaps

    Sequence, based on observed residues (ATOM records):
    >6ic3F (F:)
gqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdrfsgsksgtsasl
avsglqsedeadyycaawdatlnawvfgggt

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6ic3G (G:)
vltqppsasgtpgqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdr
fsgsksgtsaslavsglqsedeadyycaawdatlnawvfgggtkltvlsqpkaaps

    Sequence, based on observed residues (ATOM records):
    >6ic3G (G:)
gqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdrfsgsksgtsasl
avsglqsedeadyycaawdatlnawvfgggt

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6ic3H (H:)
vltqppsasgtpgqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdr
fsgsksgtsaslavsglqsedeadyycaawdatlnawvfgggtkltvlsqpkaaps

    Sequence, based on observed residues (ATOM records):
    >6ic3H (H:)
gqrvtiscsgrssnigrnlvkwyqqfpgtapklliysndqrpsgvpdrfsgsksgtsasl
avsglqsedeadyycaawdatlnawvfgggt