PDB entry 6ibv

View 6ibv on RCSB PDB site
Description: Crystal structure of NDM-1 beta-lactamase in complex with broad spectrum boronic inhibitor cpd 1
Class: hydrolase
Keywords: beta-lactamase; bacterial resistance; acyclic boronic inhibitors, HYDROLASE
Deposited on 2018-11-30, released 2019-05-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-30, with a file datestamp of 2019-10-25.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Metallo-beta-lactamase type 2
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: blaNDM-1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ibva_
  • Chain 'B':
    Compound: Metallo-beta-lactamase type 2
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: blaNDM-1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ibvb_
  • Heterogens: H9E, ZN, CA, DMS, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ibvA (A:)
mpgeirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrv
lvvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsn
qlapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafg
gclikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarma
dklr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ibvA (A:)
etgdqrfgdlvfrqlapnvwqhtsyldgavasnglivrdggrvlvvdtawtddqtaqiln
wikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhsltf
aangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgnlgd
adtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ibvB (B:)
mpgeirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrv
lvvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsn
qlapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafg
gclikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarma
dklr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ibvB (B:)
metgdqrfgdlvfrqlapnvwqhtsyldgavasnglivrdggrvlvvdtawtddqtaqil
nwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhslt
faangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgnlg
dadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr