PDB entry 6ibb

View 6ibb on RCSB PDB site
Description: Crystal structure of the rat isoform of the succinate receptor SUCNR1 (GPR91) in complex with a nanobody
Class: membrane protein
Keywords: SUCNR1 GPR91 GPCR G-Protein coupled receptor Nanobody Succinate Complex, MEMBRANE PROTEIN
Deposited on 2018-11-29, released 2019-08-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: XRAY
Resolution: 2.12 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Succinate receptor 1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Sucnr1, Gpr91
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6IYF9 (Start-323)
      • expression tag (324-329)
  • Chain 'B':
    Compound: Nanobody6
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IBB (Start-141)
    Domains in SCOPe 2.08: d6ibbb1, d6ibbb2
  • Chain 'C':
    Compound: Succinate receptor 1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Sucnr1, Gpr91
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ibbc_
  • Chain 'D':
    Compound: Nanobody6
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IBB
    Domains in SCOPe 2.08: d6ibbd_
  • Heterogens: OLC, GOL, H95, CLR, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ibbB (B:)
dykddddkevqlvesggglvqpggslrlsceasgytlanyaigwfrqapgkeregvscis
sggstvysesvkdrftisrdnakkivylqmnslqpedtavyycaadpfgerlcidpntfa
gyletwgqgtqvtvsslevlfq

    Sequence, based on observed residues (ATOM records): (download) 
    >6ibbB (B:)
vqlvesggglvqpggslrlsceasgytlanyaigwfrqapgkeregvscissggstvyse
svkdrftisrdnakkivylqmnslqpedtavyycaadpfgerlcidpntfagyletwgqg
tqvtvsslevlfq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ibbC (C:)
dykddddkaqnlscenwlalenilkkyylsafygiefivgmlgnftvvfgylfcmknwns
snvylfnlsisdlaflctlpmlirsyatgnwtygdvlcisnryvlhanlytsilfltfis
idryllmkfpfrehilqkkefailislavwvlvtlevlpmltfitstpiekgdscvdyas
sgnpkysliyslcltllgfliplsvmcffyykmvvflkkrsqqqatvlslnkplrlvvla
vvifsvlftpyhimrnvriasrldswpqgcsqkaikclyiltrplaflnsavnpifyflv
gdhfrdmlfsklrqyfksltsfrllevlfqgphhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6ibbC (C:)
cenwlalenilkkyylsafygiefivgmlgnftvvfgylfcmknwnssnvylfnlsisdl
aflctlpmlirsyatgnwtygdvlcisnryvlhanlytsilfltfisidryllmkfpfre
hilqkkefailislavwvlvtlevlpmltfitstdscvdyassgnpkysliyslcltllg
fliplsvmcffyykmvvflkkrsqqqnkplrlvvlavvifsvlftpyhimrnvriasrld
swgcsqkaikclyiltrplaflnsavnpifyflvgdhfrdmlfsk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6ibbD (D:)
dykddddkevqlvesggglvqpggslrlsceasgytlanyaigwfrqapgkeregvscis
sggstvysesvkdrftisrdnakkivylqmnslqpedtavyycaadpfgerlcidpntfa
gyletwgqgtqvtvsslevlfq

    Sequence, based on observed residues (ATOM records): (download) 
    >6ibbD (D:)
evqlvesggglvqpggslrlscealanyaigwfrqapgkeregvscissggstvysesvk
drftisrdnakivylqmnslqpedtavyycaadpfgerlcidpntfagyletwgqgtqvt
vs