PDB entry 6i9o

View 6i9o on RCSB PDB site
Description: structure of a pg1058 domain, a protein of t9ss from porphyromonas gingivalis
Deposited on 2018-11-24, released 2019-12-04
The last revision was dated 2020-06-17, with a file datestamp of 2020-06-12.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: N/A
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: OmpA family protein
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: HMPREF1555_01478
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0E2LQD9 (23-157)
      • expression tag (4-22)
  • Chain 'B':
    Compound: OmpA family protein
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: HMPREF1555_01478
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0E2LQD9 (23-157)
      • expression tag (8-22)
  • Chain 'C':
    Compound: OmpA family protein
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: HMPREF1555_01478
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0E2LQD9 (23-157)
      • expression tag (8-22)
  • Chain 'D':
    Compound: OmpA family protein
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: HMPREF1555_01478
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A0E2LQD9 (23-157)
      • expression tag (8-22)
  • Heterogens: MLD, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6i9oA (A:)
mghhhhhhssgvdlgtenlyfqslqnifydfdkatlrpesmksldeliriltdnpdirie
lgshadrkgpdaynlglsdrraksvvdyltsrgiaadrltwkgygksvpktvtakiaerh
dflkegdvlteefvaplteeqqsvcdqlnrrtefrvie

    Sequence, based on observed residues (ATOM records):
    >6i9oA (A:)
hhhhssgvdlgtenlyfqslqnifydfdkatlrpesmksldeliriltdnpdirielgsh
adrkgpdaynlglsdrraksvvdyltsrgiaadrltwkgygksvpktvtakiaerhdflk
egdvlteefvaplteeqqsvcdqlnrrtefrvie

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6i9oB (B:)
mghhhhhhssgvdlgtenlyfqslqnifydfdkatlrpesmksldeliriltdnpdirie
lgshadrkgpdaynlglsdrraksvvdyltsrgiaadrltwkgygksvpktvtakiaerh
dflkegdvlteefvaplteeqqsvcdqlnrrtefrvie

    Sequence, based on observed residues (ATOM records):
    >6i9oB (B:)
ssgvdlgtenlyfqslqnifydfdkatlrpesmksldeliriltdnpdirielgshadrk
gpdaynlglsdrraksvvdyltsrgiaadrltwkgygksvpktvtakiaerhdflkegdv
lteefvaplteeqqsvcdqlnrrtefrvie

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6i9oC (C:)
mghhhhhhssgvdlgtenlyfqslqnifydfdkatlrpesmksldeliriltdnpdirie
lgshadrkgpdaynlglsdrraksvvdyltsrgiaadrltwkgygksvpktvtakiaerh
dflkegdvlteefvaplteeqqsvcdqlnrrtefrvie

    Sequence, based on observed residues (ATOM records):
    >6i9oC (C:)
ssgvdlgtenlyfqslqnifydfdkatlrpesmksldeliriltdnpdirielgshadrk
gpdaynlglsdrraksvvdyltsrgiaadrltwkgygksvpktvtakiaerhdflkegdv
lteefvaplteeqqsvcdqlnrrtefrvie

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6i9oD (D:)
mghhhhhhssgvdlgtenlyfqslqnifydfdkatlrpesmksldeliriltdnpdirie
lgshadrkgpdaynlglsdrraksvvdyltsrgiaadrltwkgygksvpktvtakiaerh
dflkegdvlteefvaplteeqqsvcdqlnrrtefrvie

    Sequence, based on observed residues (ATOM records):
    >6i9oD (D:)
ssgvdlgtenlyfqslqnifydfdkatlrpesmksldeliriltdnpdirielgshadrk
gpdaynlglsdrraksvvdyltsrgiaadrltwkgygksvpktvtakiaerhdflkegdv
lteefvaplteeqqsvcdqlnrrtefrvie