PDB entry 6i9i

View 6i9i on RCSB PDB site
Description: Rift valley fever virus Gn in complex with a neutralizing antibody fragment
Class: viral protein
Keywords: Glycoprotein, Antibody, phlebovirus, neutralization, VIRAL PROTEIN
Deposited on 2018-11-23, released 2018-12-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-02, with a file datestamp of 2019-09-27.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RV-Gn1 Heavy chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6I9I (0-End)
    Domains in SCOPe 2.08: d6i9ia_
  • Chain 'B':
    Compound: RV-Gn1 Light chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6I9I (0-End)
    Domains in SCOPe 2.08: d6i9ib1, d6i9ib2
  • Chain 'C':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Glycoprotein
    Species: Rift Valley fever virus [TaxId:11588]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: RV-Gn1 Heavy chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6I9I (0-End)
    Domains in SCOPe 2.08: d6i9ih_
  • Chain 'L':
    Compound: RV-Gn1 Light chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6I9I
    Domains in SCOPe 2.08: d6i9il1, d6i9il2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6i9iA (A:)
tgsleesggrlvtpgtpltltctvsgidpnsdhmswvrqapgkglewiaiiyasgttyya
swakgrftisktsttvdlriaspttedtatyfcatypnyptdnlwgqgtlvtvsgtqpka
psvfplapccgdtpsstvtlgclvkgylpepvtvtwnsgtltngvrtfpsvrqssglysl
ssvvsvtsssqpvtcnvahpatntkvdktvapstcskhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6i9iA (A:)
tgsleesggrlvtpgtpltltctvsgidpnsdhmswvrqapgkglewiaiiyasgttyya
swakgrftisktsttvdlriaspttedtatyfcatypnyptdnlwgqgtlvtvsgtqpka
psvfplapccsstvtlgclvkgylpepvtvtwnsgtltngvrtfpsvrqssglyslssvv
svtsssqpvtcnvahpatntkvdktvap

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6i9iB (B:)
tgmtqtpspvsaavggtvtincqasqsvynnyllswyqqkpgqppkrliysastlasgvs
srfkgsgsgtqftltisdvqcddaatyyclgsydgnsadclafgggtevvvkgtpvaptv
lifppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynls
stltltstqynshkeytckvtqgttsvvqsfnrgdcs

    Sequence, based on observed residues (ATOM records): (download) 
    >6i9iB (B:)
tgmtqtpspvsaavggtvtincqasqsvynnyllswyqqkpgqppkrliysastlasgvs
srfkgsgsgtqftltisdvqcddaatyyclgsydgnsadclafgggtevvvkgtpvaptv
lifppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynls
stltltstqynshkeytckvtqgttsvvqsfnrgdc

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6i9iH (H:)
tgsleesggrlvtpgtpltltctvsgidpnsdhmswvrqapgkglewiaiiyasgttyya
swakgrftisktsttvdlriaspttedtatyfcatypnyptdnlwgqgtlvtvsgtqpka
psvfplapccgdtpsstvtlgclvkgylpepvtvtwnsgtltngvrtfpsvrqssglysl
ssvvsvtsssqpvtcnvahpatntkvdktvapstcskhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6i9iH (H:)
tgsleesggrlvtpgtpltltctvsgidpnsdhmswvrqapgkglewiaiiyasgttyya
swakgrftisktsttvdlriaspttedtatyfcatypnyptdnlwgqgtlvtvsgtqpka
psvfplapccgdtpsstvtlgclvkgylpepvtvtwnsgtltngvrtfpsvrqssglysl
ssvvsvtsssqpvtcnvahpatntkvdktvaps

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6i9iL (L:)
tgmtqtpspvsaavggtvtincqasqsvynnyllswyqqkpgqppkrliysastlasgvs
srfkgsgsgtqftltisdvqcddaatyyclgsydgnsadclafgggtevvvkgtpvaptv
lifppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynls
stltltstqynshkeytckvtqgttsvvqsfnrgdcs

    Sequence, based on observed residues (ATOM records): (download) 
    >6i9iL (L:)
gmtqtpspvsaavggtvtincqasqsvynnyllswyqqkpgqppkrliysastlasgvss
rfkgsgsgtqftltisdvqcddaatyyclgsydgnsadclafgggtevvvkgtpvaptvl
ifppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynlss
tltltstqynshkeytckvtqgttsvvqsfnrgdc