PDB entry 6i9a

View 6i9a on RCSB PDB site
Description: porphyromonas gingivalis gingipain k (kgp) in complex with inhibitor kyt-36
Deposited on 2018-11-22, released 2019-03-13
The last revision was dated 2019-04-03, with a file datestamp of 2019-03-29.
Experiment type: XRAY
Resolution: 1.2 Å
R-factor: N/A
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lys-gingipain W83
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: kgp, prtK, prtP
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Lys-gingipain W83
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: kgp, prtK, prtP
    Database cross-references and differences (RAF-indexed):
  • Heterogens: UNX, NA, CA, H8E, EPE, GOL, DTV, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6i9aA (A:)
dvytdhgdlyntpvrmlvvagakfkealkpwltwkaqkgfyldvhytdeaevgttnasik
afihkkyndglaasaapvflalvgdtdvisgekgkktkkvtdlyysavdgdyfpemytfr
msasspeeltniidkvlmyekatmpdksylekvlliagadyswnsqvgqptikygmqyyy
nqehgytdvynylkapytgcyshlntgvsfanytahgsetawadpllttsqlkaltnkdk
yflaignccitaqfdyvqpcfgevitrvkekgayayigsspnsywgedyywsvganavfg
vqptfegtsmgsydatfledsyntvnsimwagnlaathagnignithigahyyweayhvl
gdgsvmpyrampktntytlpaslpqnqasysiqasagsyvaiskdgvlygtgvanasgva
tvsmtkqitengnydvvitrsnylpvikqiqvgephhhhhh

    Sequence, based on observed residues (ATOM records):
    >6i9aA (A:)
dvytdhgdlyntpvrmlvvagakfkealkpwltwkaqkgfyldvhytdeaevgttnasik
afihkkyndglaasaapvflalvgdtdvisgekgkktkkvtdlyysavdgdyfpemytfr
msasspeeltniidkvlmyekatmpdksylekvlliagadyswnsqvgqptikygmqyyy
nqehgytdvynylkapytgcyshlntgvsfanytahgsetawadpllttsqlkaltnkdk
yflaignccitaqfdyvqpcfgevitrvkekgayayigsspnsywgedyywsvganavfg
vqptfegtsmgsydatfledsyntvnsimwagnlaathagnignithigahyyweayhvl
gdgsvmpyrampktntytlpaslpqnqasysiqasagsyvaiskdgvlygtgvanasgva
tvsmtkqitengnydvvitrsnylpvikqiqvg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6i9aB (B:)
dvytdhgdlyntpvrmlvvagakfkealkpwltwkaqkgfyldvhytdeaevgttnasik
afihkkyndglaasaapvflalvgdtdvisgekgkktkkvtdlyysavdgdyfpemytfr
msasspeeltniidkvlmyekatmpdksylekvlliagadyswnsqvgqptikygmqyyy
nqehgytdvynylkapytgcyshlntgvsfanytahgsetawadpllttsqlkaltnkdk
yflaignccitaqfdyvqpcfgevitrvkekgayayigsspnsywgedyywsvganavfg
vqptfegtsmgsydatfledsyntvnsimwagnlaathagnignithigahyyweayhvl
gdgsvmpyrampktntytlpaslpqnqasysiqasagsyvaiskdgvlygtgvanasgva
tvsmtkqitengnydvvitrsnylpvikqiqvgephhhhhh

    Sequence, based on observed residues (ATOM records):
    >6i9aB (B:)
dvytdhgdlyntpvrmlvvagakfkealkpwltwkaqkgfyldvhytdeaevgttnasik
afihkkyndglaasaapvflalvgdtdvisgekgkktkkvtdlyysavdgdyfpemytfr
msasspeeltniidkvlmyekatmpdksylekvlliagadyswnsqvgqptikygmqyyy
nqehgytdvynylkapytgcyshlntgvsfanytahgsetawadpllttsqlkaltnkdk
yflaignccitaqfdyvqpcfgevitrvkekgayayigsspnsywgedyywsvganavfg
vqptfegtsmgsydatfledsyntvnsimwagnlaathagnignithigahyyweayhvl
gdgsvmpyrampktntytlpaslpqnqasysiqasagsyvaiskdgvlygtgvanasgva
tvsmtkqitengnydvvitrsnylpvikqiqvg