PDB entry 6i7m

View 6i7m on RCSB PDB site
Description: influenza a nucleoprotein docked into 3d helical structure of the wild type ribonucleoprotein complex obtained using cryoem. conformation 4.
Deposited on 2018-11-16, released 2020-02-12
The last revision was dated 2020-08-26, with a file datestamp of 2020-08-21.
Experiment type: EM
Resolution: 10 Å
R-factor: N/A
AEROSPACI score: -0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleoprotein
    Species: Influenza A virus [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15682 (0-468)
      • conflict (13)
      • conflict (84)
      • conflict (216)
      • conflict (262)
      • conflict (451)
  • Chain 'B':
    Compound: nucleoprotein
    Species: Influenza A virus [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: nucleoprotein
    Species: Influenza A virus [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15682 (0-468)
      • conflict (13)
      • conflict (84)
      • conflict (216)
      • conflict (262)
      • conflict (451)
  • Chain 'D':
    Compound: nucleoprotein
    Species: Influenza A virus [TaxId:11320]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6i7mA (A:)
nateirasvgkmidgigrfyiqmctelklsdyegrliqnsltiermvlsafderrnkyle
ehpsagkdpkktggpiyrrvdgkwrrelilydkeeirriwrqanngddataglthmmiwh
snlndatyqrtralvrtgmdprmcslmqgstlprrsgaagaavkgvgtmvmelirmikrg
indrnfwrgengrrtriayermcnilkgkfqtaaqrtmvdqvresrnpgnaefedlifla
rsalilrgsvahksclpacvygsavasgydferegyslvgidpfrllqnsqvyslirpne
npahksqlvwmachsaafedlrvssfirgtkvvprgklstrgvqiasnenmetmesstle
lrsrywairtrsggntnqqrassgqisiqptfsvqrnlpfdrptimaaftgntegrtsdm
rteiirlmesarpedvsfqgrgvfelsdekatspivpsfdmsnegsyff

    Sequence, based on observed residues (ATOM records):
    >6i7mA (A:)
nateirasvgkmidgigrfyiqmctelklsdyegrliqnsltiermvlsafdtggpiyrr
vdgkwrrelilydkeeirriwrqanngddataglthmmiwhsnlndatyqrtralvrtgm
dprmcslmqgstlprrsgaagaavkgvgtmvmelirmikrginrrtriayermcnilkgk
fqtaaqrtmvdqvresrnpgnaefedliflarsalilrgsvahksclpacvygsavasgy
dferegyslvgidpfrllqnsqvyslirpnenpahksqlvwmachsaafedlrvssfirg
tkvvprgklstrgvqiasnenmetmesstlelrsrywairtrsggntdvsfqgrgvfels
dekatspivpsfdmsnegsyff

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6i7mB (B:)
ssgqisiqptfsvqrnlpf

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6i7mC (C:)
nateirasvgkmidgigrfyiqmctelklsdyegrliqnsltiermvlsafderrnkyle
ehpsagkdpkktggpiyrrvdgkwrrelilydkeeirriwrqanngddataglthmmiwh
snlndatyqrtralvrtgmdprmcslmqgstlprrsgaagaavkgvgtmvmelirmikrg
indrnfwrgengrrtriayermcnilkgkfqtaaqrtmvdqvresrnpgnaefedlifla
rsalilrgsvahksclpacvygsavasgydferegyslvgidpfrllqnsqvyslirpne
npahksqlvwmachsaafedlrvssfirgtkvvprgklstrgvqiasnenmetmesstle
lrsrywairtrsggntnqqrassgqisiqptfsvqrnlpfdrptimaaftgntegrtsdm
rteiirlmesarpedvsfqgrgvfelsdekatspivpsfdmsnegsyff

    Sequence, based on observed residues (ATOM records):
    >6i7mC (C:)
nateirasvgkmidgigrfyiqmctelklsdyegrliqnsltiermvlsafdtggpiyrr
vdgkwrrelilydkeeirriwrqanngddataglthmmiwhsnlndatyqrtralvrtgm
dprmcslmqgstlprrsgaagaavkgvgtmvmelirmikrginrrtriayermcnilkgk
fqtaaqrtmvdqvresrnpgnaefedliflarsalilrgsvahksclpacvygsavasgy
dferegyslvgidpfrllqnsqvyslirpnenpahksqlvwmachsaafedlrvssfirg
tkvvprgklstrgvqiasnenmetmesstlelrsrywairtrsggntdvsfqgrgvfels
dekatspivpsfdmsnegsyff

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6i7mD (D:)
ssgqisiqptfsvqrnlpf