PDB entry 6i60

View 6i60 on RCSB PDB site
Description: structure of alpha-l-rhamnosidase from dictyoglumus thermophilum
Deposited on 2018-11-15, released 2019-02-06
The last revision was dated 2019-09-11, with a file datestamp of 2019-09-06.
Experiment type: XRAY
Resolution: 2.74 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha-rhamnosidase
    Species: Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) [TaxId:309799]
    Gene: DICTH_0289
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Alpha-rhamnosidase
    Species: Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) [TaxId:309799]
    Gene: DICTH_0289
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PGE, AE3, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6i60A (A:)
mgsshhhhhhssglvprgshmasmkssniyspfdlkcefttnplgvdkknpifswklrhl
eknekqtayqvivsssletindnigdvwdtgkvlsseqvikyegkelepckvyfwkvrww
dskdqespfsvvntfetglmneenwkakwitkkehkyevyspdgapfglnytiayapmfr
ksfsiskkikrarvyiaglglyelyingerigdrvldpgqtdykkrvlytvydvsknird
gknaigvilgngryvkeygydfpkliiqvlveyeddsiewivsdeswkttygpitlnsly
hgeiydgrkeikgwnlpdfddstwenailaeppggklyseiyppiritktikpikmwspe
pgtyvydfgqnytgwikikvrtnesgkeirirhaeltyedgtlnystnrtalatdvyitk
gegyeeyeprftyhgfryveilgypgvptlediegkvvhtavesngeficsnelinkihh
niiwgqlsnlmsiptdcpqrdermgwmgdaqlsaeeaifnfdmigfyrkylndirdaqke
ngslsdvippywsiypgdpawstayitiawylyqyygdkyvleehyegfkkyveflkkla
pdyivsfykygdwcqpgtvrpkdnsgeltstfyfyhdvitlskiakllgkeadykyysel
adkiksafnkkflkekayasiptelseenvkallekypedikdflrqqftilsslgmfts
qtlntlplylnlvpedkvqdvlktllediiirhdyhldtgivatryifdvltsygydeva
ykivnqktypsfgymieegattlwerwekltstgmnshnhimfgsvdawfyrviagvrvg
epgwnkiifephpvgdlkyakarlntikgeveinwqktenifsmrisvpvnsegevhvpk
lferfvvkegdniiyekkgdleenekyivirvgsgsynfymeki

    Sequence, based on observed residues (ATOM records):
    >6i60A (A:)
kssniyspfdlkcefttnplgvdkknpifswklrhleknekqtayqvivsssletindni
gdvwdtgkvlsseqvikyegkelepckvyfwkvrwwdskdqespfsvvntfetglmneen
wkakwitkkehkyevyspdgapfglnytiayapmfrksfsiskkikrarvyiaglglyel
yingerigdrvldpgqtdykkrvlytvydvsknirdgknaigvilgngryvkeygydfpk
liiqvlveyeddsiewivsdeswkttygpitlnslyhgeiydgrkeikgwnlpdfddstw
enailaeppggklyseiyppiritktikpikmwspepgtyvydfgqnytgwikikvrtne
sgkeirirhaeltyedgtlnystnrtalatdvyitkgegyeeyeprftyhgfryveilgy
pgvptlediegkvvhtavesngeficsnelinkihhniiwgqlsnlmsiptdcpqrderm
gwmgdaqlsaeeaifnfdmigfyrkylndirdaqkengslsdvippywsiypgdpawsta
yitiawylyqyygdkyvleehyegfkkyveflkklapdyivsfykygdwcqpgtvrpkdn
sgeltstfyfyhdvitlskiakllgkeadykyyseladkiksafnkkflkekayasmfts
qtlntlplylnlvpedkvqdvlktllediiirhdyhldtgivatryifdvltsygydeva
ykivnqktypsfgymieegattlwerwekltstgmnshnhimfgsvdawfyrviagvrvg
epgwnkiifephpvgdlkyakarlntikgeveinwqktenifsmrisvpvnsegevhvpk
lferfvvkegdniiyekkgdleenekyivirvgsgsynfymek

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6i60B (B:)
mgsshhhhhhssglvprgshmasmkssniyspfdlkcefttnplgvdkknpifswklrhl
eknekqtayqvivsssletindnigdvwdtgkvlsseqvikyegkelepckvyfwkvrww
dskdqespfsvvntfetglmneenwkakwitkkehkyevyspdgapfglnytiayapmfr
ksfsiskkikrarvyiaglglyelyingerigdrvldpgqtdykkrvlytvydvsknird
gknaigvilgngryvkeygydfpkliiqvlveyeddsiewivsdeswkttygpitlnsly
hgeiydgrkeikgwnlpdfddstwenailaeppggklyseiyppiritktikpikmwspe
pgtyvydfgqnytgwikikvrtnesgkeirirhaeltyedgtlnystnrtalatdvyitk
gegyeeyeprftyhgfryveilgypgvptlediegkvvhtavesngeficsnelinkihh
niiwgqlsnlmsiptdcpqrdermgwmgdaqlsaeeaifnfdmigfyrkylndirdaqke
ngslsdvippywsiypgdpawstayitiawylyqyygdkyvleehyegfkkyveflkkla
pdyivsfykygdwcqpgtvrpkdnsgeltstfyfyhdvitlskiakllgkeadykyysel
adkiksafnkkflkekayasiptelseenvkallekypedikdflrqqftilsslgmfts
qtlntlplylnlvpedkvqdvlktllediiirhdyhldtgivatryifdvltsygydeva
ykivnqktypsfgymieegattlwerwekltstgmnshnhimfgsvdawfyrviagvrvg
epgwnkiifephpvgdlkyakarlntikgeveinwqktenifsmrisvpvnsegevhvpk
lferfvvkegdniiyekkgdleenekyivirvgsgsynfymeki

    Sequence, based on observed residues (ATOM records):
    >6i60B (B:)
kssniyspfdlkcefttnplgvdkknpifswklrhleknekqtayqvivsssletindni
gdvwdtgkvlsseqvikyegkelepckvyfwkvrwwdskdqespfsvvntfetglmneen
wkakwitkkehkyevyspdgapfglnytiayapmfrksfsiskkikrarvyiaglglyel
yingerigdrvldpgqtdykkrvlytvydvsknirdgknaigvilgngryvkeygydfpk
liiqvlveyeddsiewivsdeswkttygpitlnslyhgeiydgrkeikgwnlpdfddstw
enailaeppggklyseiyppiritktikpikmwspepgtyvydfgqnytgwikikvrtne
sgkeirirhaeltyedgtlnystnrtalatdvyitkgegyeeyeprftyhgfryveilgy
pgvptlediegkvvhtavesngeficsnelinkihhniiwgqlsnlmsiptdcpqrderm
gwmgdaqlsaeeaifnfdmigfyrkylndirdaqkengslsdvippywsiypgdpawsta
yitiawylyqyygdkyvleehyegfkkyveflkklapdyivsfykygdwcqpgtvrpkdn
sgeltstfyfyhdvitlskiakllgkeadykyyseladkiksafnkkflkekayasslgm
ftsqtlntlplylnlvpedkvqdvlktllediiirhdyhldtgivatryifdvltsygyd
evaykivnqktypsfgymieegattlwerwekltstgmnshnhimfgsvdawfyrviagv
rvgepgwnkiifephpvgdlkyakarlntikgeveinwqktenifsmrisvpvnsegevh
vpklferfvvkegdniiyekkgdleenekyivirvgsgsynfymek