PDB entry 6i54

View 6i54 on RCSB PDB site
Description: influenza a nucleoprotein docked into 3d helical structure of the wild type ribonucleoprotein complex obtained using cryoem. conformation 2.
Deposited on 2018-11-12, released 2019-11-13
The last revision was dated 2020-05-27, with a file datestamp of 2020-05-22.
Experiment type: EM
Resolution: 10 Å
R-factor: N/A
AEROSPACI score: -0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleoprotein
    Species: Influenza A virus (A/Wilson-Smith/1933(H1N1)) [TaxId:381518]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Influenza virus nucleoprotein
    Species: Influenza A virus (A/Wilson-Smith/1933(H1N1)) [TaxId:381518]
    Database cross-references and differences (RAF-indexed):
    • PDB 6I54 (0-18)
  • Chain 'C':
    Compound: nucleoprotein
    Species: Influenza A virus (A/Wilson-Smith/1933(H1N1)) [TaxId:381518]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Influenza virus nucleoprotein
    Species: Influenza A virus (A/Wilson-Smith/1933(H1N1)) [TaxId:381518]
    Database cross-references and differences (RAF-indexed):
    • PDB 6I54 (0-18)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6i54A (A:)
nateirasvgkmidgigrfyiqmctelklsdyegrliqnsltiermvlsafdtggpiyrr
vdgkwrrelilydkeeirriwrqanngddataglthmmiwhsnlndatyqrtralvrtgm
dprmcslmqgstlprrsgaagaavkgvgtmvmelirmikrginrrtriayermcnilkgk
fqtaaqrtmvdqvresrnpgnaefedliflarsalilrgsvahksclpacvygsavasgy
dferegyslvgidpfrllqnsqvyslirpnenpahksqlvwmachsaafedlrvssfirg
tkvvprgklstrgvqiasnenmetmesstlelrsrywairtrsggntdvsfqgrgvfels
dekatspivpsfdmsnegsyff

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6i54B (B:)
ssgqisiqptfsvqrnlpf

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6i54C (C:)
nateirasvgkmidgigrfyiqmctelklsdyegrliqnsltiermvlsafdtggpiyrr
vdgkwrrelilydkeeirriwrqanngddataglthmmiwhsnlndatyqrtralvrtgm
dprmcslmqgstlprrsgaagaavkgvgtmvmelirmikrginrrtriayermcnilkgk
fqtaaqrtmvdqvresrnpgnaefedliflarsalilrgsvahksclpacvygsavasgy
dferegyslvgidpfrllqnsqvyslirpnenpahksqlvwmachsaafedlrvssfirg
tkvvprgklstrgvqiasnenmetmesstlelrsrywairtrsggntdvsfqgrgvfels
dekatspivpsfdmsnegsyff

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6i54D (D:)
ssgqisiqptfsvqrnlpf