PDB entry 6i3p

View 6i3p on RCSB PDB site
Description: crystal structure of deah-box atpase prp22 with bound ssrna
Deposited on 2018-11-07, released 2019-03-06
The last revision was dated 2019-07-03, with a file datestamp of 2019-06-28.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative pre-mRNA splicing factor
    Species: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId:759272]
    Gene: CTHT_0035640
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putative pre-mRNA splicing factor
    Species: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId:759272]
    Gene: CTHT_0035640
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Putative pre-mRNA splicing factor
    Species: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId:759272]
    Gene: CTHT_0035640
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Putative pre-mRNA splicing factor
    Species: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId:759272]
    Gene: CTHT_0035640
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: RNA (5'-r(p*up*up*up*up*up*up*up*up*up*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: RNA (5'-r(p*up*up*up*up*up*up*up*up*up*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: RNA (5'-r(p*up*up*up*up*up*up*up*up*up*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: RNA (5'-r(p*up*up*up*up*up*up*up*up*up*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6i3pA (A:)
tnmsikeqreslpvfqfrdqiiqavkdnqilivvgetgsgkttqvtqylaeagftkygmi
gctqprrvaavsvakrvaeevgcqlgqevgytirfedvtspatkikymtdgmlqreilmd
pdlkrysvimldeahertiatdvlfallkktvkrrpdlkvivtsatldaekfseyfnscp
iftipgrtfpveilysrepepdyleaalttvmqihlteppgdilvfltgqeeidtaceil
yermkalgpsvpeliilpiysalpsemqsrifepappgsrkvviatniaetsitidyiyy
vvdpgfvkqnaydpklgmdslvvtpisqaqanqragragrtgpgkcfrlyteaayqseml
pttipdiqrqnlantilllkamgindllrfdfmdpppvntmltaleelyalgalddegll
trlgrkmadfpmepslskvliasvdkgcsdemvtivsmlnlqqifyrpkdkqqqadqkka
kfhdptgdhltllnvynawknsgysnawcfenyiqaramrrardvrqqivkimerhrhpi
iscgrdtdkirqalcagffrntarkdpqegyktltegtpvylhpssalfgkqaewvlyhe
lvlttkeymhfttaiepkwlveaaptffklaptdrlskrkkaeriqplynkyegedgwrl
saqrraarpgggggtwg

    Sequence, based on observed residues (ATOM records):
    >6i3pA (A:)
sikeqreslpvfqfrdqiiqavkdnqilivvgetgsgkttqvtqylaeagftkygmigct
qprrvaavsvakrvaeevgcqlgqevgytirfedvtspatkikymtdgmlqreilmdpdl
krysvimldeahertiatdvlfallkktvkrrpdlkvivtsatldaekfseyfnscpift
ipgrtfpveilysrepepdyleaalttvmqihlteppgdilvfltgqeeidtaceilyer
mkalgpsvpeliilpiysalpsemqsrifepappgsrkvviatniaetsitidyiyyvvd
pgfvkqnaydpklgmdslvvtpisqaqanqragragrtgpgkcfrlyteaayqsemlptt
ipdiqrqnlantilllkamgindllrfdfmdpppvntmltaleelyalgalddeglltrl
grkmadfpmepslskvliasvdkgcsdemvtivsmlnlqqifyrpkdkqqqadqkkakfh
dptgdhltllnvynawknsgysnawcfenyiqaramrrardvrqqivkimerhrhpiisc
grdtdkirqalcagffrntarkdyktltegtpvylhpssalfgkqaewvlyhelvlttke
ymhfttaiepkwlveaaptffklapt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6i3pB (B:)
tnmsikeqreslpvfqfrdqiiqavkdnqilivvgetgsgkttqvtqylaeagftkygmi
gctqprrvaavsvakrvaeevgcqlgqevgytirfedvtspatkikymtdgmlqreilmd
pdlkrysvimldeahertiatdvlfallkktvkrrpdlkvivtsatldaekfseyfnscp
iftipgrtfpveilysrepepdyleaalttvmqihlteppgdilvfltgqeeidtaceil
yermkalgpsvpeliilpiysalpsemqsrifepappgsrkvviatniaetsitidyiyy
vvdpgfvkqnaydpklgmdslvvtpisqaqanqragragrtgpgkcfrlyteaayqseml
pttipdiqrqnlantilllkamgindllrfdfmdpppvntmltaleelyalgalddegll
trlgrkmadfpmepslskvliasvdkgcsdemvtivsmlnlqqifyrpkdkqqqadqkka
kfhdptgdhltllnvynawknsgysnawcfenyiqaramrrardvrqqivkimerhrhpi
iscgrdtdkirqalcagffrntarkdpqegyktltegtpvylhpssalfgkqaewvlyhe
lvlttkeymhfttaiepkwlveaaptffklaptdrlskrkkaeriqplynkyegedgwrl
saqrraarpgggggtwg

    Sequence, based on observed residues (ATOM records):
    >6i3pB (B:)
sikeqreslpvfqfrdqiiqavkdnqilivvgetgsgkttqvtqylaeagftkygmigct
qprrvaavsvakrvaeevgcqlgqevgytirfedvtspatkikymtdgmlqreilmdpdl
krysvimldeahertiatdvlfallkktvkrrpdlkvivtsatldaekfseyfnscpift
ipgrtfpveilysrepepdyleaalttvmqihlteppgdilvfltgqeeidtaceilyer
mkalgpsvpeliilpiysalpsemqsrifepagsrkvviatniaetsitidyiyyvvdpg
fvkqnaydpklgmdslvvtpisqaqanqragragrtgpgkcfrlyteaayqsemlpttip
diqrqnlantilllkamgindllrfdfmdpppvntmltaleelyalgalddeglltrlgr
kmadfpmepslskvliasvdkgcsdemvtivsmlnlqqifyrpkdkqqqadqkkakfhdp
tgdhltllnvynawknsgysnawcfenyiqaramrrardvrqqivkimerhrhpiiscgr
dtdkirqalcagffrntarkdpgyktltegtpvylhpssalfgkqaewvlyhelvlttke
ymhfttaiepkwlveaaptffkl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6i3pC (C:)
tnmsikeqreslpvfqfrdqiiqavkdnqilivvgetgsgkttqvtqylaeagftkygmi
gctqprrvaavsvakrvaeevgcqlgqevgytirfedvtspatkikymtdgmlqreilmd
pdlkrysvimldeahertiatdvlfallkktvkrrpdlkvivtsatldaekfseyfnscp
iftipgrtfpveilysrepepdyleaalttvmqihlteppgdilvfltgqeeidtaceil
yermkalgpsvpeliilpiysalpsemqsrifepappgsrkvviatniaetsitidyiyy
vvdpgfvkqnaydpklgmdslvvtpisqaqanqragragrtgpgkcfrlyteaayqseml
pttipdiqrqnlantilllkamgindllrfdfmdpppvntmltaleelyalgalddegll
trlgrkmadfpmepslskvliasvdkgcsdemvtivsmlnlqqifyrpkdkqqqadqkka
kfhdptgdhltllnvynawknsgysnawcfenyiqaramrrardvrqqivkimerhrhpi
iscgrdtdkirqalcagffrntarkdpqegyktltegtpvylhpssalfgkqaewvlyhe
lvlttkeymhfttaiepkwlveaaptffklaptdrlskrkkaeriqplynkyegedgwrl
saqrraarpgggggtwg

    Sequence, based on observed residues (ATOM records):
    >6i3pC (C:)
tnmsikeqreslpvfqfrdqiiqavkdnqilivvgetgsgkttqvtqylaeagftkygmi
gctqprrvaavsvakrvaeevgcqlgqevgytirfedvtspatkikymtdgmlqreilmd
pdlkrysvimldeahertiatdvlfallkktvkrrpdlkvivtsatldaekfseyfnscp
iftipgrtfpveilysrepepdyleaalttvmqihlteppgdilvfltgqeeidtaceil
yermkalgpsvpeliilpiysalpsemqsrifepappgsrkvviatniaetsitidyiyy
vvdpgfvkqnaydpklgmdslvvtpisqaqanqragragrtgpgkcfrlyteaayqseml
pttipdiqrqnlantilllkamgindllrfdfmdpppvntmltaleelyalgalddegll
trlgrkmadfpmepslskvliasvdkgcsdemvtivsmlnlqqifyrpkdkqqqadqkka
kfhdptgdhltllnvynawknsgysnawcfenyiqaramrrardvrqqivkimerhrhpi
iscgrdtdkirqalcagffrntarkdpgyktltegtpvylhpssalfgkqaewvlyhelv
lttkeymhfttaiepkwlveaaptffklap

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6i3pD (D:)
tnmsikeqreslpvfqfrdqiiqavkdnqilivvgetgsgkttqvtqylaeagftkygmi
gctqprrvaavsvakrvaeevgcqlgqevgytirfedvtspatkikymtdgmlqreilmd
pdlkrysvimldeahertiatdvlfallkktvkrrpdlkvivtsatldaekfseyfnscp
iftipgrtfpveilysrepepdyleaalttvmqihlteppgdilvfltgqeeidtaceil
yermkalgpsvpeliilpiysalpsemqsrifepappgsrkvviatniaetsitidyiyy
vvdpgfvkqnaydpklgmdslvvtpisqaqanqragragrtgpgkcfrlyteaayqseml
pttipdiqrqnlantilllkamgindllrfdfmdpppvntmltaleelyalgalddegll
trlgrkmadfpmepslskvliasvdkgcsdemvtivsmlnlqqifyrpkdkqqqadqkka
kfhdptgdhltllnvynawknsgysnawcfenyiqaramrrardvrqqivkimerhrhpi
iscgrdtdkirqalcagffrntarkdpqegyktltegtpvylhpssalfgkqaewvlyhe
lvlttkeymhfttaiepkwlveaaptffklaptdrlskrkkaeriqplynkyegedgwrl
saqrraarpgggggtwg

    Sequence, based on observed residues (ATOM records):
    >6i3pD (D:)
nmsikeqreslpvfqfrdqiiqavkdnqilivvgetgsgkttqvtqylaeagftkygmig
ctqprrvaavsvakrvaeevgcqlgqevgytirfedvtspatkikymtdgmlqreilmdp
dlkrysvimldeahertiatdvlfallkktvkrrpdlkvivtsatldaekfseyfnscpi
ftipgrtfpveilysrepepdyleaalttvmqihlteppgdilvfltgqeeidtaceily
ermkalgpsvpeliilpiysalpsemqsrifepappgsrkvviatniaetsitidyiyyv
vdpgfvkqnaydpklgmdslvvtpisqaqanqragragrtgpgkcfrlyteaayqsemlp
ttipdiqrqnlantilllkamgindllrfdfmdpppvntmltaleelyalgalddegllt
rlgrkmadfpmepslskvliasvdkgcsdemvtivsmlnlqqifyrpkdkqqqadqkkak
fhdptgdhltllnvynawknsgysnawcfenyiqaramrrardvrqqivkimerhrhpii
scgrdtdkirqalcagffrntarkdpgyktltegtpvylhpssalfgkqaewvlyhelvl
ttkeymhfttaiepkwlveaaptffklapt

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.