PDB entry 6i3n

View 6i3n on RCSB PDB site
Description: helical myd88 death domain filament
Deposited on 2018-11-06, released 2019-11-20
The last revision was dated 2020-03-11, with a file datestamp of 2020-03-06.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Myeloid differentiation primary response protein MyD88
    Species: Homo sapiens [TaxId:9606]
    Gene: MYD88
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6i3nA (A:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nA (A:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6i3nB (B:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nB (B:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6i3nC (C:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nC (C:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6i3nD (D:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nD (D:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6i3nE (E:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nE (E:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6i3nF (F:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nF (F:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6i3nG (G:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nG (G:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6i3nH (H:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nH (H:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6i3nI (I:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nI (I:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6i3nJ (J:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nJ (J:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6i3nK (K:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nK (K:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6i3nL (L:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nL (L:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6i3nM (M:)
snamaaggpgagsaapvsstsslplaalnmrvrrrlslflnvrtqvaadwtalaeemdfe
yleirqletqadptgrlldawqgrpgasvgrllelltklgrddvllelgpsieedcqkyi
lkqqqeeaekplqvaavdssvprtaelagittldwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6i3nM (M:)
slplaalnmrvrrrlslflnvrtqvaadwtalaeemdfeyleirqletqadptgrlldaw
qgrpgasvgrllelltklgrddvllelgpsieedcqkyilkqq