PDB entry 6i1k

View 6i1k on RCSB PDB site
Description: crystal structure of catalytically inactive fncas12a in complex with a crrna guide and a dsdna target
Deposited on 2018-10-29, released 2019-01-23
The last revision was dated 2019-02-20, with a file datestamp of 2019-02-15.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CRISPR-associated endonuclease Cas12a
    Species: Francisella tularensis subsp. novicida (strain U112) [TaxId:401614]
    Gene: cas12a, cpf1, FTN_1397
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0Q7Q2 (3-1301)
      • expression tag (2)
  • Chain 'B':
    Compound: crRNA (40-MER)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: DNA target strand (38-MER)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA non-target strand (33-MER)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: MG, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6i1kA (A:)
    snasiyqefvnkyslsktlrfelipqgktlenikarglilddekrakdykkakqiidkyh
    qffieeilssvcisedllqnysdvyfklkksdddnlqkdfksakdtikkqiseyikdsek
    fknlfnqnlidakkgqesdlilwlkqskdngielfkansditdidealeiiksfkgwtty
    fkgfhenrknvyssndiptsiiyrivddnlpkflenkakyeslkdkapeainyeqikkdl
    aeeltfdidyktsevnqrvfsldevfeianfnnylnqsgitkfntiiggkfvngentkrk
    gineyinlysqqindktlkkykmsvlfkqilsdtesksfvidkleddsdvvttmqsfyeq
    iaafktveeksiketlsllfddlkaqkldlskiyfkndksltdlsqqvfddysvigtavl
    eyitqqiapknldnpskkeqeliakktekakylsletiklaleefnkhrdidkqcrfeei
    lanfaaipmifdeiaqnkdnlaqisikyqnqgkkdllqasaeddvkaikdlldqtnnllh
    klkifhisqsedkanildkdehfylvfeecyfelanivplynkirnyitqkpysdekfkl
    nfenstlangwdknkepdntailfikddkyylgvmnkknnkifddkaikenkgegykkiv
    ykllpgankmlpkvffsaksikfynpsedilrirnhsthtkngspqkgyekfefniedcr
    kfidfykqsiskhpewkdfgfrfsdtqrynsidefyrevenqgykltfenisesyidsvv
    nqgklylfqiynkdfsayskgrpnlhtlywkalfdernlqdvvyklngeaelfyrkqsip
    kkithpakeaianknkdnpkkesvfeydlikdkrftedkfffhcpitinfkssgankfnd
    einlllkekandvhilsidrgerhlayytlvdgkgniikqdtfniigndrmktnyhdkla
    aiekdrdsarkdwkkinnikemkegylsqvvheiaklvieynaivvfedlnfgfkrgrfk
    vekqvyqklekmlieklnylvfkdnefdktggvlrayqltapfetfkkmgkqtgiiyyvp
    agftskicpvtgfvnqlypkyesvsksqeffskfdkicynldkgyfefsfdyknfgdkaa
    kgkwtiasfgsrlinfrnsdknhnwdtrevyptkelekllkdysieyghgecikaaicge
    sdkkffakltsvlntilqmrnsktgteldylispvadvngnffdsrqapknmpqdadang
    ayhiglkglmllgriknnqegkklnlvikneeyfefvqnrnn
    

    Sequence, based on observed residues (ATOM records):
    >6i1kA (A:)
    asiyqefvnkyslsktlrfelipqgktlenikarglilddekrakdykkakqiidkyhqf
    fieeilssvcisedllqnysdvyfklkksdddnlqkdfksakdtikkqiseyikdsekfk
    nlfnqnlidakkgqesdlilwlkqskdngielfkansditdidealeiiksfkgwttyfk
    gfhenrknvyssndiptsiiyrivddnlpkflenkakyeslkdkapeainyeqikkdlae
    eltfdidyktsevnqrvfsldevfeianfnnylnqsgitkfntiiggkfvngentkrkgi
    neyinlysqqindktlkkykmsvlfkqilsdtesksfvidkleddsdvvttmqsfyeqia
    afktveeksiketlsllfddlkaqkldlskiyfkndksltdlsqqvfddysvigtavley
    itqqiapknldnpskkeqeliakktekakylsletiklaleefnkhrdidkqcrfeeila
    nfaaipmifdeiaqnkdnlaqisikyqnqgkkdllqasaeddvkaikdlldqtnnllhkl
    kifhisqsedkanildkdehfylvfeecyfelanivplynkirnyitqkpysdekfklnf
    enstlangwdknkepdntailfikddkyylgvmnkknnkifddkaikenkgegykkivyk
    llpgankmlpkvffsaksikfynpsedilrirnhsthtkngspqkgyekfefniedcrkf
    idfykqsiskhpewkdfgfrfsdtqrynsidefyrevenqgykltfenisesyidsvvnq
    gklylfqiynkdfsayskgrpnlhtlywkalfdernlqdvvyklngeaelfyrkqsipkk
    ithpakeaiknkdnpkkesvfeydlikdkrftedkfffhcpitinfkssgankfndeinl
    llkekandvhilsidrgerhlayytlvdgkgniikqdtfniigndrmktnyhdklaaiek
    drdsarkdwkkinnikemkegylsqvvheiaklvieynaivvfedlnfgfkrgrfkvekq
    vyqklekmlieklnylvfkdnefdktggvlrayqltapfetfkkmgkqtgiiyyvpagft
    skicpvtgfvnqlypkyesvsksqeffskfdkicynldkgyfefsfdyknfgaakgkwti
    asfgsrlievyptkelekllkdysieyghgecikaaicgesdkkffakltsvlntilqmr
    nsktgteldylispvadvngnffdsrqapknmpqdadangayhiglkglmllgriknnqe
    gkklnlvikneeyfefvqnrnn
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.