PDB entry 6i0x

View 6i0x on RCSB PDB site
Description: porphyromonas gingivalis peptidylarginine deminase (ppad) mutant g231n/e232t/n235d in complex with cl-amidine.
Deposited on 2018-10-26, released 2019-01-23
The last revision was dated 2019-02-20, with a file datestamp of 2019-02-15.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptidylarginine deiminase
    Species: Porphyromonas gingivalis (strain ATCC BAA-308 / W83) [TaxId:242619]
    Gene: PG_1424
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RQJ2 (0-End)
      • engineered mutation (187-188)
      • engineered mutation (191)
  • Chain 'B':
    Compound: Peptidylarginine deiminase
    Species: Porphyromonas gingivalis (strain ATCC BAA-308 / W83) [TaxId:242619]
    Gene: PG_1424
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RQJ2 (0-End)
      • engineered mutation (187-188)
      • engineered mutation (191)
  • Heterogens: NA, BFB, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6i0xA (A:)
afqetnppagpvraiaeyersaavlvrypfgipmelikelakndkvitivasesqkntvi
tqytqsgvnlsncdfiiaktdsywtrdytgwfamydtnkvglvdfiynrprpnddefpky
eaqylgiemfgmklkqtggnymtdgygsavqshiaytensslsqaqvnqkmkdylgithh
dvvqdpnntyidhvdcwgkylapnkilirkvpdnhpqhqaledmaayfaaqtcawgtkye
vyralatneqpytnslilnnrvfvpvngpasvdndalnvyktampgyeiigvkgasgtpw
lgtdalhcrthevadkgylyikhypilgeqagpdykieadvvscanatispvqcyyring
sgsfkaadmtmestghytysftglnkndkveyyisaadnsgrketypfigepdpfkftcm
netntctvtgaahhhhhh

    Sequence, based on observed residues (ATOM records):
    >6i0xA (A:)
afqetnppagpvraiaeyersaavlvrypfgipmelikelakndkvitivasesqkntvi
tqytqsgvnlsncdfiiaktdsywtrdytgwfamydtnkvglvdfiynrprpnddefpky
eaqylgiemfgmklkqtggnymtdgygsavqshiaytensslsqaqvnqkmkdylgithh
dvvqdpnntyidhvdcwgkylapnkilirkvpdnhpqhqaledmaayfaaqtcawgtkye
vyralatneqpytnslilnnrvfvpvngpasvdndalnvyktampgyeiigvkgasgtpw
lgtdalhcrthevadkgylyikhypilgeqagpdykieadvvscanatispvqcyyring
sgsfkaadmtmestghytysftglnkndkveyyisaadnsgrketypfigepdpfkftcm

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6i0xB (B:)
afqetnppagpvraiaeyersaavlvrypfgipmelikelakndkvitivasesqkntvi
tqytqsgvnlsncdfiiaktdsywtrdytgwfamydtnkvglvdfiynrprpnddefpky
eaqylgiemfgmklkqtggnymtdgygsavqshiaytensslsqaqvnqkmkdylgithh
dvvqdpnntyidhvdcwgkylapnkilirkvpdnhpqhqaledmaayfaaqtcawgtkye
vyralatneqpytnslilnnrvfvpvngpasvdndalnvyktampgyeiigvkgasgtpw
lgtdalhcrthevadkgylyikhypilgeqagpdykieadvvscanatispvqcyyring
sgsfkaadmtmestghytysftglnkndkveyyisaadnsgrketypfigepdpfkftcm
netntctvtgaahhhhhh

    Sequence, based on observed residues (ATOM records):
    >6i0xB (B:)
afqetnppagpvraiaeyersaavlvrypfgipmelikelakndkvitivasesqkntvi
tqytqsgvnlsncdfiiaktdsywtrdytgwfamydtnkvglvdfiynrprpnddefpky
eaqylgiemfgmklkqtggnymtdgygsavqshiaytensslsqaqvnqkmkdylgithh
dvvqdpnntyidhvdcwgkylapnkilirkvpdnhpqhqaledmaayfaaqtcawgtkye
vyralatneqpytnslilnnrvfvpvngpasvdndalnvyktampgyeiigvkgasgtpw
lgtdalhcrthevadkgylyikhypilgeqagpdykieadvvscanatispvqcyyring
sgsfkaadmtmestghytysftglnkndkveyyisaadnsgrketypfigepdpfkftcm
ne