PDB entry 6hz9

View 6hz9 on RCSB PDB site
Description: structure of mcrbc without dna binding domains (class 5)
Deposited on 2018-10-22, released 2019-07-24
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 4.8 Å
R-factor: N/A
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 5-methylcytosine-specific restriction enzyme B
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrB, rglB, b4346, JW5871
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Protein McrC
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrC, b4345, JW5789
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Protein McrC
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: mcrC, b4345, JW5789
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GNP, GDP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6hz9A (A:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9A (A:)
ycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrv
nmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranls
kvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalr
rrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrigh
syfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6hz9B (B:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9B (B:)
ycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrv
nmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranls
kvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalr
rrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrigh
syfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6hz9C (C:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9C (C:)
ycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrv
nmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranls
kvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalr
rrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrigh
syfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6hz9D (D:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9D (D:)
lndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqfh
qsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfgev
mmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsfi
diepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfccg
ledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6hz9E (E:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9E (E:)
alndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqf
hqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfge
vmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsf
idiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfcc
gledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6hz9F (F:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9F (F:)
alndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqf
hqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfge
vmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsf
idiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfcc
gledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6hz9G (G:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9G (G:)
ycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrv
nmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranls
kvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalr
rrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrigh
syfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6hz9H (H:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9H (H:)
ycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrv
nmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranls
kvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalr
rrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrigh
syfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6hz9I (I:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9I (I:)
ycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrv
nmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranls
kvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalr
rrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrigh
syfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6hz9J (J:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9J (J:)
lndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqfh
qsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfgev
mmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsfi
diepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfccg
ledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6hz9K (K:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9K (K:)
alndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqf
hqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfge
vmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsf
idiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfcc
gledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6hz9L (L:)
msktesycledalndlfipettietilkrltikkniilqgppgvgktfvarrlaylltge
kapqrvnmvqfhqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiidei
nranlskvfgevmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslav
vdyalrrrfsfidiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgk
gfrighsyfccgledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllgdssg
shhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hz9L (L:)
alndlfipettietilkrltikkniilqgppgvgktfvarrlaylltgekapqrvnmvqf
hqsysyedfiqgyrpngvgfrrkdgifynfcqqakeqpekkyifiideinranlskvfge
vmmlmehdkrgenwsvpltysendeerfyvpenvyiiglmntadrslavvdyalrrrfsf
idiepgfdtpqfrnfllnkkaepsfveslcqkmnelnqeiskeatilgkgfrighsyfcc
gledgtspdtqwlneivmtdiaplleeyffddpykqqkwtnkllg

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6hz9M (M:)
meqpvipvrniyymltyawgylqeikqanleaipgnnlldilgyvlnkgvlqlsrrglel
dynpnteiipgikgriefaktirgfhlnhgktvstfdmlnedtlanriikstlailikhe
klnstirdearslyrklpgistlhltpqhfsylnggkntryykfvisvckfivnnsipgq
nkghyrfydfernekemsllyqkflyefcrreltsanttrsylkwdassisdqslnllpr
metditirssekilivdakyyksifsrrmgtekfhsqnlyqlmnylwslkpengeniggl
liyphvdtavkhrykingfdiglctvnlgqewpcihqelldifdeylk

    Sequence, based on observed residues (ATOM records):
    >6hz9M (M:)
qpvipvrniyymltyawgyanleaipgnnlldilgyvlnkgvlqlsrrgleldynpntei
ipgikgriefaktirgfhlnhgktvstfdmlnedtlanriikstlailikheklnstird
earslyrklpgistlhltpqhfsylnggkntryykfvisvckfivnnsipgqnkghyrfy
dfernekemsllyqkflyefcrreltsanttrsylkwdassisdqslnllprmetditir
ssekilivdakyyksifsrekfhsqnlyqlmnylwslkpengenigglliyphvdtavkh
rykingfdiglctvnlgqewpcihqelldifdeylk

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6hz9N (N:)
meqpvipvrniyymltyawgylqeikqanleaipgnnlldilgyvlnkgvlqlsrrglel
dynpnteiipgikgriefaktirgfhlnhgktvstfdmlnedtlanriikstlailikhe
klnstirdearslyrklpgistlhltpqhfsylnggkntryykfvisvckfivnnsipgq
nkghyrfydfernekemsllyqkflyefcrreltsanttrsylkwdassisdqslnllpr
metditirssekilivdakyyksifsrrmgtekfhsqnlyqlmnylwslkpengeniggl
liyphvdtavkhrykingfdiglctvnlgqewpcihqelldifdeylk

    Sequence, based on observed residues (ATOM records):
    >6hz9N (N:)
qpvipvrniyymltyawgyanleaipgnnlldilgyvlnkgvlqlsrrgleldynpntei
ipgikgriefaktirgfhlnhgktvstfdmlnedtlanriikstlailikheklnstird
earslyrklpgistlhltpqhfsylnggkntryykfvisvckfivnnsipgqnkghyrfy
dfernekemsllyqkflyefcrreltsanttrsylkwdassisdqslnllprmetditir
ssekilivdakyyksifsrekfhsqnlyqlmnylwslkpengenigglliyphvdtavkh
rykingfdiglctvnlgqewpcihqelldifdeylk