PDB entry 6hyu

View 6hyu on RCSB PDB site
Description: crystal structure of dhx8 helicase bound to single stranded poly- adenine rna
Deposited on 2018-10-22, released 2019-08-28
The last revision was dated 2019-09-25, with a file datestamp of 2019-09-20.
Experiment type: XRAY
Resolution: 3.22 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent RNA helicase DHX8
    Species: Homo sapiens [TaxId:9606]
    Gene: DHX8, DDX8
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RNA (5'-r(*ap*ap*ap*ap*ap*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: ATP-dependent RNA helicase DHX8
    Species: Homo sapiens [TaxId:9606]
    Gene: DHX8, DDX8
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: RNA (5'-r(*a*ap*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6hyuA (A:)
asygkktqmsileqreslpiyklkeqlvqavhdnqilivigetgsgkttqitqylaeagy
tsrgkigctqprrvaamsvakrvseefgcclgqevgytirfedctspetvikymtdgmll
reclidpdltqyaiimldeahertihtdvlfgllkktvqkrqdmklivtsatldavkfsq
yfyeapiftipgrtypveilytkepetdyldaslitvmqihlteppgdilvfltgqeeid
taceilyermkslgpdvpeliilpvysalpsemqtrifdpappgsrkvviatniaetslt
idgiyyvvdpgfvkqkvynsktgidqlvvtpisqaqakqragragrtgpgkcyrlytera
yrdemlttnvpeiqrtnlastvlslkamgindllsfdfmdappmetlitameqlytlgal
ddeglltrlgrrmaefplepmlckmlimsvhlgcseemltivsmlsvqnvfyrpkdkqal
adqkkakfhqtegdhltllavynswknnkfsnpwcyenfiqarslrraqdirkqmlgimd
rhkldvvscgkstvrvqkaicsgffrnaakkdpqegyrtlidqqvvyihpssalfnrqpe
wvvyhelvlttkeymrevttidprwlvefapaffkvsdptklskqkkqqrleplynryee
pnawrisrafrrr

    Sequence, based on observed residues (ATOM records):
    >6hyuA (A:)
yklkeqlvqavhdnqilivigetgsgkttqitqylaeagytsrgkigctqprrvaamsva
krvseefgcclgqevgytirfedctspetvikymtdgmllreclidpdltqyaiimldea
hertihtdvlfgllkktvqkrqdmklivtsatldavkfsqyfyeapiftipgrtypveil
ytkepetdyldaslitvmqihlteppgdilvfltgqeeidtaceilyermkslgpdvpel
iilpvysalpsemqtrifdpappgsrkvviatniaetsltidgiyyvvdpgfvkqkvyns
ktgidqlvvtpisqaqakqragragrtgpgkcyrlyterayrdemlttnvpeiqrtnlas
tvlslkamgindllsfdfmdappmetlitameqlytlgalddeglltrlgrrmaefplep
mlckmlimsvhlgcseemltivsmlsvqnvfyrpkdkqaladqkkakfhqtegdhltlla
vynswknnkfsnpwcyenfiqarslrraqdirkqmlgimdrhkldvvscgkstvrvqkai
csgffrnaakkdpqegyrtlidqqvvyihpssalfnrqpewvvyhelvlttkeymrevtt
idprwlvefapaff

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6hyuC (C:)
asygkktqmsileqreslpiyklkeqlvqavhdnqilivigetgsgkttqitqylaeagy
tsrgkigctqprrvaamsvakrvseefgcclgqevgytirfedctspetvikymtdgmll
reclidpdltqyaiimldeahertihtdvlfgllkktvqkrqdmklivtsatldavkfsq
yfyeapiftipgrtypveilytkepetdyldaslitvmqihlteppgdilvfltgqeeid
taceilyermkslgpdvpeliilpvysalpsemqtrifdpappgsrkvviatniaetslt
idgiyyvvdpgfvkqkvynsktgidqlvvtpisqaqakqragragrtgpgkcyrlytera
yrdemlttnvpeiqrtnlastvlslkamgindllsfdfmdappmetlitameqlytlgal
ddeglltrlgrrmaefplepmlckmlimsvhlgcseemltivsmlsvqnvfyrpkdkqal
adqkkakfhqtegdhltllavynswknnkfsnpwcyenfiqarslrraqdirkqmlgimd
rhkldvvscgkstvrvqkaicsgffrnaakkdpqegyrtlidqqvvyihpssalfnrqpe
wvvyhelvlttkeymrevttidprwlvefapaffkvsdptklskqkkqqrleplynryee
pnawrisrafrrr

    Sequence, based on observed residues (ATOM records):
    >6hyuC (C:)
yklkeqlvqavhdnqilivigetgsgkttqitqylaeagytsrgkigctqprrvaamsva
krvseefgcclgqevgytirfedctspetvikymtdgmllreclidpdltqyaiimldea
hertihtdvlfgllkktvqkrqdmklivtsatldavkfsqyfyeapiftipgtypveily
tkedaslitvmqihlteppgdilvfltgqeeidtaceilyermkslgpdvpeliilpvys
alpsemqtrifdpappgsrkvviatniaetltidgiyyvvdpgfvkqkvvqaqakqragr
agrtgpgkcyrlyterayrdemltpeiqrtnlastvlslkamgindllppmetlitameq
lytlgalddeglltrlgrrmaefplepmlckmlimsvhlgcseemltivsmlsvqnvfyr
pkdkqaladqkkakfhqtegdhltllavynswknnkfsnpwcyenfiqarslrraqdirk
qmlgimdrhkldvvscgkstvrvqkaicsgffrnaakkdpqegyrtlidqqvvyihpssa
lfnrqpewvvyhelvlttkeymrevttidprwlvefapaffkvsdpt

  • Chain 'D':
    No sequence available.