PDB entry 6hyl

View 6hyl on RCSB PDB site
Description: Structure of PCM1 LIR motif bound to GABARAP
Class: signaling protein
Keywords: Autophagy, ATG8, LIR, SIGNALING PROTEIN
Deposited on 2018-10-22, released 2019-05-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-15, with a file datestamp of 2019-05-10.
Experiment type: XRAY
Resolution: 1.56 Å
R-factor: N/A
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pericentriolar material 1 protein,Gamma-aminobutyric acid receptor-associated protein
    Species: Homo sapiens [TaxId:9606]
    Gene: GABARAP, FLC3B, HT004
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15154 (Start-18)
      • linker (19-20)
    • Uniprot O95166 (21-137)
    Domains in SCOPe 2.08: d6hyla_
  • Chain 'B':
    Compound: Pericentriolar material 1 protein,Gamma-aminobutyric acid receptor-associated protein
    Species: Homo sapiens [TaxId:9606]
    Gene: GABARAP, FLC3B, HT004
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q15154 (Start-18)
      • linker (19-20)
    • Uniprot O95166 (21-137)
    Domains in SCOPe 2.08: d6hylb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6hylA (A:)
gptmgdeedfvkvedlplkgsmkfvykeehpfekrrsegekirkkypdrvpvivekapka
rigdldkkkylvpsdltvgqfyflirkrihlraedalfffvnnvipptsatmgqlyqehh
eedfflyiaysdesvygl

    Sequence, based on observed residues (ATOM records): (download) 
    >6hylA (A:)
dfvkvedlplkgsmkfvykeehpfekrrsegekirkkypdrvpvivekapkarigdldkk
kylvpsdltvgqfyflirkrihlraedalfffvnnvipptsatmgqlyqehheedfflyi
aysdesvygl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6hylB (B:)
gptmgdeedfvkvedlplkgsmkfvykeehpfekrrsegekirkkypdrvpvivekapka
rigdldkkkylvpsdltvgqfyflirkrihlraedalfffvnnvipptsatmgqlyqehh
eedfflyiaysdesvygl

    Sequence, based on observed residues (ATOM records): (download) 
    >6hylB (B:)
dfvkvedlplkgsmkfvykeehpfekrrsegekirkkypdrvpvivekapkarigdldkk
kylvpsdltvgqfyflirkrihlraedalfffvnnvipptsatmgqlyqehheedfflyi
aysdesvygl