PDB entry 6hy0

View 6hy0 on RCSB PDB site
Description: atomic models of p1, p4 c-terminal fragment and p8 fitted in the bacteriophage phi6 nucleocapsid reconstructed with icosahedral symmetry
Deposited on 2018-10-18, released 2019-06-12
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: major inner protein p1
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: major inner protein p1
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: packaging enzyme p4
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'D':
    Compound: Major Outer Capsid Protein P8
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'E':
    Compound: Major Outer Capsid Protein P8
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'F':
    Compound: Major Outer Capsid Protein P8
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'G':
    Compound: Major Outer Capsid Protein P8
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'H':
    Compound: Major Outer Capsid Protein P8
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'I':
    Compound: Major Outer Capsid Protein P8
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'J':
    Compound: Major Outer Capsid Protein P8
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'K':
    Compound: Major Outer Capsid Protein P8
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'L':
    Compound: Major Outer Capsid Protein P8
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'M':
    Compound: Major Outer Capsid Protein P8
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6hy0A (A:)
mfnlkvkdlngsargltqafaigelknqlsvgalqlplqftrtfsasmtsellwevgkgn
idpvmyarlffqyaqaggalsvdelvnqfteyhqstacnpeiwrkltayitgssnraika
davgkvpptaileqlrtlapsehelfhhittdfvchvlsplgfilpdaayvyrvgrtaty
pnfyalvdcvrasdlrrmltalssvdskmlqatfkakgalapalisqhlanaattafers
rgnfdanavvssvltilgrlwspstpkeldpsarlrntngidqlrsnlalfiayqdmvkq
rgraevifsdeelsstiipwfieamsevspfklrpinettsyigqtsaidhmgqpshvvv
yedwqfakeitaftpvklannsnqrfldvepgisdrmsatlapigntfavsafvknrtav
yeavsqrgtvnsngaemtlgfpsvverdyaldrdpmvaiaalrtgivdeslearasndlk
rsmfnyyaavmhyavahnpevvvsehqgvaaeqgslylvwnvrtelripvgynaieggsi
rtpepleaiaynkpiqpsevlqakvldlanhttsihiwpwheastefayedaysvtirnk
rytaevkefellglgqrrervrilkptvahaiiqmwyswfveddrtlaaarrtsrddaek
laidgrrmqnavtllrkiemigttgigasavhlaqsrivdqmagrgliddssdlhvginr
hririwaglavlqmmgllsrseaealtkvlgdsnalgmvvattdidpsl

    Sequence, based on observed residues (ATOM records):
    >6hy0A (A:)
mfnlkvkdlngsargltqafaigelknqlsvgalqlplqftrtfsasmtsellwevgkgn
idpvmyarlffqyaqaggalsvdelvnqfteyhqstacnpeiwrkltayitgssnraika
davgkvpptaileqlrtlapsehelfhhittdfvchvlsplgfilpdaayvyrvgrtaty
pnfyalvdcvrasdlrrmltalssvdskmlqatfkakgalapalisqhlanaattafers
rgnfdanavvssvltilgrlwspstpkeldpsarlrntngidqlrsnlalfiayqdmvkq
rgraevifsdeelsstiipwfieamsevspfklrpinettsyigqtsaidhmgqpshvvv
yedwqfakeitaftpvklannsnqrfldvepgisdrmsatlapigntfavsafvknrtav
yeavsqrgtvnsngaemtlgfpsvverdyaldrdpmvaiaalrtgivdeslearasndlk
rsmfnyyaavmhyavahnpevvvsehqgvaaeqgslylvwnvrtelripvgynaieggsi
rtpepleaiaynkpiqpsevlqakvldlanhttsihiwpwheastefayedaysvtirnk
rytaevkefellglgqrrervrilkptvahaiiqmwyswfveddrtlaaarrtsrddaek
laidgrrmqnavtllrkiemigttgigasavhlaqsrivdqmagrgliddssdlhvginr
hririwaglavlqmmgllsrseaealtkvlgdsnalgmvvattdid

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6hy0B (B:)
mfnlkvkdlngsargltqafaigelknqlsvgalqlplqftrtfsasmtsellwevgkgn
idpvmyarlffqyaqaggalsvdelvnqfteyhqstacnpeiwrkltayitgssnraika
davgkvpptaileqlrtlapsehelfhhittdfvchvlsplgfilpdaayvyrvgrtaty
pnfyalvdcvrasdlrrmltalssvdskmlqatfkakgalapalisqhlanaattafers
rgnfdanavvssvltilgrlwspstpkeldpsarlrntngidqlrsnlalfiayqdmvkq
rgraevifsdeelsstiipwfieamsevspfklrpinettsyigqtsaidhmgqpshvvv
yedwqfakeitaftpvklannsnqrfldvepgisdrmsatlapigntfavsafvknrtav
yeavsqrgtvnsngaemtlgfpsvverdyaldrdpmvaiaalrtgivdeslearasndlk
rsmfnyyaavmhyavahnpevvvsehqgvaaeqgslylvwnvrtelripvgynaieggsi
rtpepleaiaynkpiqpsevlqakvldlanhttsihiwpwheastefayedaysvtirnk
rytaevkefellglgqrrervrilkptvahaiiqmwyswfveddrtlaaarrtsrddaek
laidgrrmqnavtllrkiemigttgigasavhlaqsrivdqmagrgliddssdlhvginr
hririwaglavlqmmgllsrseaealtkvlgdsnalgmvvattdidpsl

    Sequence, based on observed residues (ATOM records):
    >6hy0B (B:)
mfnlkvkdlngsargltqafaigelknqlsvgalqlplqftrtfsasmtsellwevgkgn
idpvmyarlffqyaqaggalsvdelvnqfteyhqstacnpeiwrkltayitgssnraika
davgkvpptaileqlrtlapsehelfhhittdfvchvlsplgfilpdaayvyrvgrtaty
pnfyalvdcvrasdlrrmltalssvdskmlqatfkakgalapalisqhlanaattafers
rgnfdanavvssvltilgrlwspstpkeldpsarlrntngidqlrsnlalfiayqdmvkq
rgraevifsdeelsstiipwfieamsevspfklrpinettsyigqtsaidhmgqpshvvv
yedwqfakeitaftpvklannsnqrfldvepgisdrmsatlapigntfavsafvknrtav
yeavsqrgtvnsngaemtlgfpsvverdyaldrdpmvaiaalrtgivdeslearasndlk
rsmfnyyaavmhyavahnpevvvsehqgvaaeqgslylvwnvrtelripvgynaieggsi
rtpepleaiaynkpiqpsevlqakvldlanhttsihiwpwheastefayedaysvtirnk
rytaevkefellglgqrrervrilkptvahaiiqmwyswfveddrtlaaarrtsrddaek
laidgrrmqnavtllrkiemigttgigasavhlaqsrivdqmagrgliddssdlhvginr
hririwaglavlqmmgllsrseaealtkvlgdsnalgmvvattdid

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6hy0C (C:)
mpivvtqahidrvgiaadlldaspvslqvlgrptaintvviktyiaavmelaskqggsla
gvdirpsvllkdtaiftkpkaksadvesdvdvldtgiysvpglarkpvthrwpsegiysg
vtalmgatgsgksitlneklrpdvlirwgevaeaydeldtavhistldemlivciglgal
gfnvavdsvrpllfrlkgaasaggivavfyslltdisnlftqydcsvvmvvnpmvdaeki
eyvfgqvmastvgailcadgnvsrtmfrtnkgrifngaaplaadthmpsmdrptsmkald
htsiasvaplergsvdtddrnsaprrganfsl

    Sequence, based on observed residues (ATOM records):
    >6hy0C (C:)
ptsmkaldhtsiasvaplergsvdtddrnsaprrganfs

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6hy0D (D:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyrs

    Sequence, based on observed residues (ATOM records):
    >6hy0D (D:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyr

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6hy0E (E:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyrs

    Sequence, based on observed residues (ATOM records):
    >6hy0E (E:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyr

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6hy0F (F:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyrs

    Sequence, based on observed residues (ATOM records):
    >6hy0F (F:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyr

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6hy0G (G:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyrs

    Sequence, based on observed residues (ATOM records):
    >6hy0G (G:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyr

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6hy0H (H:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyrs

    Sequence, based on observed residues (ATOM records):
    >6hy0H (H:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyr

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6hy0I (I:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyrs

    Sequence, based on observed residues (ATOM records):
    >6hy0I (I:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyr

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6hy0J (J:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyrs

    Sequence, based on observed residues (ATOM records):
    >6hy0J (J:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyr

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6hy0K (K:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyrs

    Sequence, based on observed residues (ATOM records):
    >6hy0K (K:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyr

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6hy0L (L:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyrs

    Sequence, based on observed residues (ATOM records):
    >6hy0L (L:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyr

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6hy0M (M:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyrs

    Sequence, based on observed residues (ATOM records):
    >6hy0M (M:)
mllpvvaraavpaiesaiaatpglvsriaaaigskvspsailaavksnpvvagltlaqig
stgydayqqllenhpevaemlkdlsfkadeiqpdfignlgqyreelelvedaarfvggms
nlirlrqaleldikyyglkmqlndmgyr