PDB entry 6hxg

View 6hxg on RCSB PDB site
Description: PDX1.2/PDX1.3 complex (intermediate)
Class: plant protein
Keywords: Swinging arm lysine; Vitamin B6, Pseudoenzyme, Reaction intermediate, PLANT PROTEIN
Deposited on 2018-10-17, released 2019-04-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-04-24, with a file datestamp of 2019-04-19.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyridoxal 5'-phosphate synthase-like subunit PDX1.2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX12, A37, PDX1L2, At3g16050, MSL1.3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hxga_
  • Chain 'B':
    Compound: Pyridoxal 5'-phosphate synthase subunit PDX1.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX13, GIP2, PDX1L3, RSR4, At5g01410, T10O8.120
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hxgb_
  • Chain 'C':
    Compound: Pyridoxal 5'-phosphate synthase-like subunit PDX1.2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX12, A37, PDX1L2, At3g16050, MSL1.3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hxgc_
  • Chain 'D':
    Compound: Pyridoxal 5'-phosphate synthase subunit PDX1.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX13, GIP2, PDX1L3, RSR4, At5g01410, T10O8.120
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hxgd_
  • Chain 'E':
    Compound: Pyridoxal 5'-phosphate synthase-like subunit PDX1.2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX12, A37, PDX1L2, At3g16050, MSL1.3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hxge_
  • Chain 'F':
    Compound: Pyridoxal 5'-phosphate synthase subunit PDX1.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX13, GIP2, PDX1L3, RSR4, At5g01410, T10O8.120
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hxgf_
  • Chain 'G':
    Compound: Pyridoxal 5'-phosphate synthase-like subunit PDX1.2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX12, A37, PDX1L2, At3g16050, MSL1.3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hxgg_
  • Chain 'H':
    Compound: Pyridoxal 5'-phosphate synthase subunit PDX1.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX13, GIP2, PDX1L3, RSR4, At5g01410, T10O8.120
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hxgh_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6hxgA (A:)
madqamtdqdqgavtlysgtaitdakknhpfsvkvglaqvlrggaivevssvnqaklaes
agacsvivsdpvrsrggvrrmpdpvlikevkravsvpvmararvghfveaqileslavdy
ideseiisvadddhfinkhnfrspficgcrdtgealrriregaamiriqgdltatgniae
tvknvrslmgevrvlnnmdddevftfakkisapydlvaqtkqmgrvpvvqfasggittpa
daalmmqlgcdgvfvgsevfdgpdpfkklrsivqavqhyndphvlaemssglenamesln
vrgdriqdfgqgsvhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6hxgA (A:)
pfsvkvglaqvlrggaivevssvnqaklaesagacsvivsdvrsrggvrrmpdpvlikev
kravsvpvmararvghfveaqileslavdyideseiisvadddhfinkhnfrspficgcr
dtgealrriregaamiriqgdltatgniaetvknvrslmgevrvlnnmdddevftfakki
sapydlvaqtkqmgrvpvvqfasggittpadaalmmqlgcdgvfvgvfdgpdpfkklrsi
vqavqhyndphvlaemssglenam

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6hxgB (B:)
spfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsdp
qmikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfrip
fvcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevft
fakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifksgdp
arraraivqavthysdpemlvevscglgeam

    Sequence, based on observed residues (ATOM records): (download) 
    >6hxgB (B:)
spfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsdp
qmikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfrip
fvcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevft
fakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgifksgdpar
raraivqavthysdpemlvevscglgeam

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6hxgC (C:)
madqamtdqdqgavtlysgtaitdakknhpfsvkvglaqvlrggaivevssvnqaklaes
agacsvivsdpvrsrggvrrmpdpvlikevkravsvpvmararvghfveaqileslavdy
ideseiisvadddhfinkhnfrspficgcrdtgealrriregaamiriqgdltatgniae
tvknvrslmgevrvlnnmdddevftfakkisapydlvaqtkqmgrvpvvqfasggittpa
daalmmqlgcdgvfvgsevfdgpdpfkklrsivqavqhyndphvlaemssglenamesln
vrgdriqdfgqgsvhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6hxgC (C:)
pfsvkvglaqvlrggaivevssvnqaklaesagacsvivsdggvrrmpdpvlikevkrav
svpvmararvghfveaqileslavdyideseiisvadddhfinkhnfrspficgcrdtge
alrriregaamiriqgdltatgniaetvknvrslmgevrvlnnmdddevftfakkisapy
dlvaqtkqmgrvpvvqfasggittpadaalmmqlgcdgvfvgvfdgpdpfkklrsivqav
qhyndphvlaemssglena

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6hxgD (D:)
spfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsdp
qmikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfrip
fvcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevft
fakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifksgdp
arraraivqavthysdpemlvevscglgeam

    Sequence, based on observed residues (ATOM records): (download) 
    >6hxgD (D:)
pfsvkvglaqmlrggvimdvvnaeqariaeeagacavmaleggvarmsdpqmikeikqav
tipvmakarighfveaqileaigidyidesevltladedhhinkhnfripfvcgcrnlge
alrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevftfakklaapyd
lvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgifksgdparraraivqavt
hysdpemlvevscglgea

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6hxgE (E:)
madqamtdqdqgavtlysgtaitdakknhpfsvkvglaqvlrggaivevssvnqaklaes
agacsvivsdpvrsrggvrrmpdpvlikevkravsvpvmararvghfveaqileslavdy
ideseiisvadddhfinkhnfrspficgcrdtgealrriregaamiriqgdltatgniae
tvknvrslmgevrvlnnmdddevftfakkisapydlvaqtkqmgrvpvvqfasggittpa
daalmmqlgcdgvfvgsevfdgpdpfkklrsivqavqhyndphvlaemssglenamesln
vrgdriqdfgqgsvhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6hxgE (E:)
hpfsvkvglaqvlrggaivevssvnqaklaesagacsvivsdgvrrmpdpvlikevkrav
svpvmararvghfveaqileslavdyideseiisvadddhfinkhnfrspficgcrdtge
alrriregaamiriqgdltatgniaetvknvrslmgevrvlnnmdddevftfakkisapy
dlvaqtkqmgrvpvvqfasggittpadaalmmqlgcdgvfvgpdpfkklrsivqavqhyn
dphvlaemssglena

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6hxgF (F:)
spfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsdp
qmikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfrip
fvcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevft
fakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifksgdp
arraraivqavthysdpemlvevscglgeam

    Sequence, based on observed residues (ATOM records): (download) 
    >6hxgF (F:)
spfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalegvarmsdpqmikeikqav
tipvmakarighfveaqileaigidyidesevltladedhhinkhnfripfvcgcrnlge
alrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevftfakklaapyd
lvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvggdparraraivqavthysd
pemlvevscglgea

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6hxgG (G:)
madqamtdqdqgavtlysgtaitdakknhpfsvkvglaqvlrggaivevssvnqaklaes
agacsvivsdpvrsrggvrrmpdpvlikevkravsvpvmararvghfveaqileslavdy
ideseiisvadddhfinkhnfrspficgcrdtgealrriregaamiriqgdltatgniae
tvknvrslmgevrvlnnmdddevftfakkisapydlvaqtkqmgrvpvvqfasggittpa
daalmmqlgcdgvfvgsevfdgpdpfkklrsivqavqhyndphvlaemssglenamesln
vrgdriqdfgqgsvhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6hxgG (G:)
hpfsvkvglaqvlrggaivevssvnqaklaesagacsvivsdggvrrmpdpvlikevkra
vsvpvmararvghfveaqileslavdyideseiisvadddhfinkhnfrspficgcrdtg
ealrriregaamiriqgdltatgniaetvknvrslmgevrvlnnmdddevftfakkisap
ydlvaqtkqmgrvpvvqfasggittpadaalmmqlgcdgvfvgvfdgpdpfkklrsivqa
vqhyndphvlaemssglena

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6hxgH (H:)
spfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsdp
qmikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfrip
fvcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevft
fakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifksgdp
arraraivqavthysdpemlvevscglgeam

    Sequence, based on observed residues (ATOM records): (download) 
    >6hxgH (H:)
spfsvkvglaqmlrggvimdvvnaeqariaeeagacavmaleggvarmsdpqmikeikqa
vtipvmakarighfveaqileaigidyidesevltladedhhinkhnfripfvcgcrnlg
ealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevftfakklaapy
dlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgifksgdparraraivqav
thysdpemlvevscglgea