PDB entry 6hvq

View 6hvq on RCSB PDB site
Description: The structure of Dps from Listeria innocua soaked before soaking experiments with Zn, Co and La
Class: metal binding protein
Keywords: Dps, metal binding. cage shaped protein, ferroxidase, itron translocation, METAL BINDING PROTEIN
Deposited on 2018-10-11, released 2019-09-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-09-11, with a file datestamp of 2019-09-06.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA protection during starvation protein
    Species: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) [TaxId:272626]
    Gene: dps, flp, fri, lin0942
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hvqa_
  • Chain 'B':
    Compound: DNA protection during starvation protein
    Species: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) [TaxId:272626]
    Gene: dps, flp, fri, lin0942
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hvqb_
  • Chain 'C':
    Compound: DNA protection during starvation protein
    Species: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) [TaxId:272626]
    Gene: dps, flp, fri, lin0942
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hvqc_
  • Chain 'D':
    Compound: DNA protection during starvation protein
    Species: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) [TaxId:272626]
    Gene: dps, flp, fri, lin0942
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hvqd_
  • Chain 'E':
    Compound: DNA protection during starvation protein
    Species: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) [TaxId:272626]
    Gene: dps, flp, fri, lin0942
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80725 (Start-155)
      • conflict (45)
    Domains in SCOPe 2.08: d6hvqe_
  • Chain 'F':
    Compound: DNA protection during starvation protein
    Species: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) [TaxId:272626]
    Gene: dps, flp, fri, lin0942
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6hvqf_
  • Heterogens: LA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6hvqA (A:)
mktinsvdtkeflnhqvanlnvftvkihqihwymrghnfftlhekmddlysefgeqmdev
aerllaiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgielt
dkegddvtndmliafkasidkhiwmfkaflgkaple

    Sequence, based on observed residues (ATOM records): (download) 
    >6hvqA (A:)
nsvdtkeflnhqvanlnvftvkihqihwymrghnfftlhekmddlysefgeqmdevaerl
laiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgieltdkeg
ddvtndmliafkasidkhiwmfkaflgkaple

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6hvqB (B:)
mktinsvdtkeflnhqvanlnvftvkihqihwymrghnfftlhekmddlysefgeqmdev
aerllaiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgielt
dkegddvtndmliafkasidkhiwmfkaflgkaple

    Sequence, based on observed residues (ATOM records): (download) 
    >6hvqB (B:)
svdtkeflnhqvanlnvftvkihqihwymrghnfftlhekmddlysefgeqmdevaerll
aiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgieltdkegd
dvtndmliafkasidkhiwmfkaflgkaple

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6hvqC (C:)
mktinsvdtkeflnhqvanlnvftvkihqihwymrghnfftlhekmddlysefgeqmdev
aerllaiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgielt
dkegddvtndmliafkasidkhiwmfkaflgkaple

    Sequence, based on observed residues (ATOM records): (download) 
    >6hvqC (C:)
svdtkeflnhqvanlnvftvkihqihwymrghnfftlhekmddlysefgeqmdevaerll
aiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgieltdkegd
dvtndmliafkasidkhiwmfkaflgkaple

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6hvqD (D:)
mktinsvdtkeflnhqvanlnvftvkihqihwymrghnfftlhekmddlysefgeqmdev
aerllaiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgielt
dkegddvtndmliafkasidkhiwmfkaflgkaple

    Sequence, based on observed residues (ATOM records): (download) 
    >6hvqD (D:)
svdtkeflnhqvanlnvftvkihqihwymrghnfftlhekmddlysefgeqmdevaerll
aiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgieltdkegd
dvtndmliafkasidkhiwmfkaflgkaple

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6hvqE (E:)
mktinsvdtkeflnhqvanlnvftvkihqihwymrghnfftlhekhddlysefgeqmdev
aerllaiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgielt
dkegddvtndmliafkasidkhiwmfkaflgkaple

    Sequence, based on observed residues (ATOM records): (download) 
    >6hvqE (E:)
nsvdtkeflnhqvanlnvftvkihqihwymrghnfftlhekhddlysefgeqmdevaerl
laiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgieltdkeg
ddvtndmliafkasidkhiwmfkaflgkaple

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6hvqF (F:)
mktinsvdtkeflnhqvanlnvftvkihqihwymrghnfftlhekmddlysefgeqmdev
aerllaiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgielt
dkegddvtndmliafkasidkhiwmfkaflgkaple

    Sequence, based on observed residues (ATOM records): (download) 
    >6hvqF (F:)
svdtkeflnhqvanlnvftvkihqihwymrghnfftlhekmddlysefgeqmdevaerll
aiggspfstlkeflenasveeapytkpktmdqlmedlvgtlellrdeykqgieltdkegd
dvtndmliafkasidkhiwmfkaflgkaple