PDB entry 6hv8

View 6hv8 on RCSB PDB site
Description: cryo-em structure of s. cerevisiae polymerase epsilon deltacat mutant
Deposited on 2018-10-10, released 2018-12-12
The last revision was dated 2018-12-12, with a file datestamp of 2018-12-07.
Experiment type: EM
Resolution: 4.4 Å
R-factor: N/A
AEROSPACI score: 0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase epsilon catalytic subunit A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: POL2, DUN2, YNL262W, N0825
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA polymerase epsilon subunit B
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: DPB2, YPR175W, P9705.7
    Database cross-references and differences (RAF-indexed):
    • Uniprot P24482
      • conflict (265)
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6hv8A (A:)
    smirkqaesyanstwevlqykdsgepgvlevfvtingkvqnitfhipktiymkfksqtmp
    lqkikncliekssaslpnnpktsnpaggqlfkitlpesvfleekenctsifndenvlgvf
    egtitphqraimdlgasvtfrskamgalgkgiqqgfemkdlsmaenerylsgfsmdigyl
    lhfptsigyeffslfkswgdtitilvlkpsnqaqeinasslgqiykqmfekkkgkietys
    ylvdikedinfefvyftdisklyrrlsqettklkeerglqfllllqspfitkllgtirll
    nqmpivklslnevllpqlnwqptllkklvnhvlssgswishliklsqysnipicnlrlds
    mdyiidvlyarklkkenivlwwnekaplpdhggiqndfdlntswimndsefpkinnsgvy
    dnvvldvgvdnltvntiltsalindaegsdlvnnnmgiddkdavinspsefvhdafsnda
    lnvlrgmlkewwdealkenstadllvnslaswvqnpnaklfdgllryhvhnltkkallql
    vnefsalgstivyadrnqiliktnkyspencyaysqymmkavrtnpmfsyldlnikrywd
    lliwmdkfnfsglacieieekenqdytavsqwqlkkflspiyqpefedwmmiildsmlkt
    kqsylklnsgtqrptqivnvkkqdkedsvenslngfshlfskplmkrvkklfknqqefil
    dpqyeadyvipvlpgshlnvknpllelvkslchvmllskstileirtlrkellkifelre
    fakvaefkdpslslvvpdflceycffisdidfckaapesifscvrchkafnqvllqehli
    qklrsdiesyliqdlrcsrchkvkrdymsahcpcagawegtlpresivqklnvfkqvaky
    ygfdillsciadlt
    

    Sequence, based on observed residues (ATOM records):
    >6hv8A (A:)
    smirkqaesyanstwevlqykdsgepgvlevfvtingkvqnitfhipktiymkfksqtmp
    lqkikncliekssaslpnnpktsnpesvfleekenctsifndenvlgvfegtitphqrai
    mlsmaenerylsgfsmdigyllhfptsigyeffslfkswgdtitilvlkpsnqaqeinas
    slgqiykqmfekkkgkietysylvdikedinfefvyftdisklyrrlsqettklkeergl
    qfllllqspfitkllgtirllnqmpivklslnevllpqlnwqptllkklvnhvlssgswi
    shliklsqysnipicnlrldsmdyiidvlyarklkkenivlwwnekaplpdhggiqnwim
    ndsefpkinnsgvydnvvldvgvdnltvntiltssndalnvlrgmlkewwdealkensta
    dllvnslaswvqnpnaklfdgllryhvhnltkkallqlvnefsalgstivyadrnqilik
    tnkyspencyaysqymmkavrtnpmfsyldlnikrywdlliwmdkfnfsglacieieeke
    nqdytavsqwqlkkflspiyqpefedwmmiildsmlktkqsylklnkedsvenslngfsh
    lfskplmkrvkklfknqqefildpqyeashlnvknpllelvkslchvmllskstileisl
    vvpdflceycffisdidfckfscvrchkafnqvllqehliqklrsdiesyliqdlrcsrc
    hkvkrdymsahcpcagawegtlpresivqklnvfkqvakyygfdillsciadlt
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6hv8B (B:)
    mfgsgnvlpvkiqppllrplayrvlsrkyglsiksdglsalaefvgtniganwrqgpati
    kfleqfaavwkqqerglfidqsgvkeviqemkerekvewshehpiqheenilgrtddden
    nsddempiaadsslqnvslsspmrqpterdeykqpfkpesskaldwrdyfkvinasqqqr
    fsynphkmqfifvpnkkqnglggiagflpdiedkvqmfltryyltndrvmrnenfqnsdm
    fnplssmvslqnelsntnrqqqsssnsitpiknllgrdaqnflllgllnknfkgnwsled
    psgsveidisqtiptqghyyvpgcmvlvegiyysvgnkfhvtsmtlppgerreitletig
    nldllgihgisnnnfiarldkdlkirlhllekeltdhkfvilganlflddlkimtalski
    lqklnddpptlliwqgsftsvpvfasmssrnissstqfknnfdalatllsrfdnltentt
    mifipgpndlwgsmvslgasgtlpqdpipsaftkkinkvcknvvwssnptriaylsqeiv
    ifrddlsgrfkrhrlefpfnesedvytendnmmskdtdivpidelvkepdqlpqkvqetr
    klvktildqghlspfldslrpiswdldhtltlcpipstmvlcdttsaqfdltyngckvin
    pgsfihnrrarymeyvpsskktiqeeiyi
    

    Sequence, based on observed residues (ATOM records):
    >6hv8B (B:)
    fkvinasqqqrfsynphkmqfifvpflpdiedkvqmfltryyltndrvmrnensitpikn
    llgrdaqnflllgllnknfkgnwsledpsgsveidisqtiptqghyyvpgcmvlvegiyy
    svgnkfhvtsmtlppgerreitletignldllgirldkdlkirlhllekeltdhkfviln
    lflddlkimtalskilqklnddpptlliwqgsftsvpvfasmssrnissstqfknnfdal
    atllsrfdnltenttmifipgpndltlpqdpipsaftkkinkvcknvvwssnptriayls
    qeivifrddlsgrfkrhrleetrklvktildqghlspfldslrpiswdldhtltlcpips
    tmvlcdttsaqfdltyngckvinpgsfinrrarymeyvpsskktiqeeiy