PDB entry 6huy

View 6huy on RCSB PDB site
Description: hmdii from desulfurobacterium thermolithotrophum reconstitued with fe- guanylylpyridinol (fegp) cofactor and co-crystallized with methenyl- tetrahydrofolate form a
Deposited on 2018-10-09, released 2019-01-09
The last revision was dated 2019-03-13, with a file datestamp of 2019-03-08.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase-related protein
    Species: Desulfurobacterium thermolithotrophum DSM 11699 [TaxId:868864]
    Gene: Dester_1504
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase-related protein
    Species: Desulfurobacterium thermolithotrophum DSM 11699 [TaxId:868864]
    Gene: Dester_1504
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase-related protein
    Species: Desulfurobacterium thermolithotrophum DSM 11699 [TaxId:868864]
    Gene: Dester_1504
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase-related protein
    Species: Desulfurobacterium thermolithotrophum DSM 11699 [TaxId:868864]
    Gene: Dester_1504
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FE9, GOL, GUE, DMS, PG4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6huyA (A:)
mrvtvygfgslnyysnklnvpeklggeppyggsamavefakaghdvtlsdpnidkvpdei
rkkvedagvklttddieaakeaevailftpfrggvtfkiaetilpylvenavicttctms
ilvlnsylqnaiflegredigfstmhpaaipgtpqhkhyliatnellrkpivteeqiekl
kklatdtgkeayllpaelvspvgdmgivttaiafagaieyykvsrdilktkrsmtefqia
qslqvisslvtkygleglikllnvdamkaslqsmildkneqpltvtaskllekieetipe
likeaenfspseptytsapspmlvehmedlvgddvlkgilreswkkfyenvsernkekla
aalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6huyA (A:)
mrvtvygfgslnyysnklnvpeklggeppyggsamavefakaghdvtlsdpnidkvpdei
rkkvedagvklttddieaakeaevailftpfrggvtfkiaetilpylvenavicttctms
ilvlnsylqnaiflegredigfstmhpaaipgtpqhkhyliatnellrkpivteeqiekl
kklatdtgkeayllpaelvspvgdmgivttaiafagaieyykvsrdilktkrsmtefqia
qslqvisslvtkygleglikllnvdamkaslqsmildkneqpltvtaskllekieetipe
likeaenfspseptytsapspmlvehmedlvgddvlkgilreswkkfyen

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6huyB (B:)
mrvtvygfgslnyysnklnvpeklggeppyggsamavefakaghdvtlsdpnidkvpdei
rkkvedagvklttddieaakeaevailftpfrggvtfkiaetilpylvenavicttctms
ilvlnsylqnaiflegredigfstmhpaaipgtpqhkhyliatnellrkpivteeqiekl
kklatdtgkeayllpaelvspvgdmgivttaiafagaieyykvsrdilktkrsmtefqia
qslqvisslvtkygleglikllnvdamkaslqsmildkneqpltvtaskllekieetipe
likeaenfspseptytsapspmlvehmedlvgddvlkgilreswkkfyenvsernkekla
aalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6huyB (B:)
mrvtvygfgslnyysnklnvpeklggeppyggsamavefakaghdvtlsdpnidkvpdei
rkkvedagvklttddieaakeaevailftpfrggvtfkiaetilpylvenavicttctms
ilvlnsylqnaiflegredigfstmhpaaipgtpqhkhyliatnellrkpivteeqiekl
kklatdtgkeayllpaelvspvgdmgivttaiafagaieyykvsrdilktkrsmtefqia
qslqvisslvtkygleglikllnvdamkaslqsmildkneqpltvtaskllekieetipe
likeaenfspseptytsapspmlvehmedlvgddvlkgilreswkkfyenvsernke

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6huyC (C:)
mrvtvygfgslnyysnklnvpeklggeppyggsamavefakaghdvtlsdpnidkvpdei
rkkvedagvklttddieaakeaevailftpfrggvtfkiaetilpylvenavicttctms
ilvlnsylqnaiflegredigfstmhpaaipgtpqhkhyliatnellrkpivteeqiekl
kklatdtgkeayllpaelvspvgdmgivttaiafagaieyykvsrdilktkrsmtefqia
qslqvisslvtkygleglikllnvdamkaslqsmildkneqpltvtaskllekieetipe
likeaenfspseptytsapspmlvehmedlvgddvlkgilreswkkfyenvsernkekla
aalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6huyC (C:)
mrvtvygfgslnyysnklnvpeklggeppyggsamavefakaghdvtlsdpnidkvpdei
rkkvedagvklttddieaakeaevailftpfrggvtfkiaetilpylvenavicttctms
ilvlnsylqnaiflegredigfstmhpaaipgtpqhkhyliatnellrkpivteeqiekl
kklatdtgkeayllpaelvspvgdmgivttaiafagaieyykvsrdilktkrsmtefqia
qslqvisslvtkygleglikllnvdamkaslqsmildkneqpltvtaskllekieetipe
likeaenfspseptytsapspmlvehmedlvgddvlkgilreswkkfyenv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6huyD (D:)
mrvtvygfgslnyysnklnvpeklggeppyggsamavefakaghdvtlsdpnidkvpdei
rkkvedagvklttddieaakeaevailftpfrggvtfkiaetilpylvenavicttctms
ilvlnsylqnaiflegredigfstmhpaaipgtpqhkhyliatnellrkpivteeqiekl
kklatdtgkeayllpaelvspvgdmgivttaiafagaieyykvsrdilktkrsmtefqia
qslqvisslvtkygleglikllnvdamkaslqsmildkneqpltvtaskllekieetipe
likeaenfspseptytsapspmlvehmedlvgddvlkgilreswkkfyenvsernkekla
aalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6huyD (D:)
mrvtvygfgslnyysnklnvpeklggeppyggsamavefakaghdvtlsdpnidkvpdei
rkkvedagvklttddieaakeaevailftpfrggvtfkiaetilpylvenavicttctms
ilvlnsylqnaiflegredigfstmhpaaipgtpqhkhyliatnellrkpivteeqiekl
kklatdtgkeayllpaelvspvgdmgivttaiafagaieyykvsrdilktkrsmtefqia
qslqvisslvtkygleglikllnvdamkaslqsmildkneqpltvtaskllekieetipe
likeaenfspseptytsapspmlvehmedlvgddvlkgilreswkkfyenvsern