PDB entry 6hum

View 6hum on RCSB PDB site
Description: structure of the photosynthetic complex i from thermosynechococcus elongatus
Deposited on 2018-10-09, released 2019-01-09
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.34 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NAD(P)H-quinone oxidoreductase subunit 1
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: NAD(P)H-quinone oxidoreductase subunit 2
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: NAD(P)H-quinone oxidoreductase subunit 3
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: NAD(P)H-quinone oxidoreductase chain 4 1
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: NAD(P)H-quinone oxidoreductase subunit 4L
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: NADH dehydrogenase subunit 5
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: NADH dehydrogenase subunit 6
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: NAD(P)H-quinone oxidoreductase subunit H
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: NAD(P)H-quinone oxidoreductase subunit I
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: NAD(P)H-quinone oxidoreductase subunit J
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: NAD(P)H-quinone oxidoreductase subunit K
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: NAD(P)H-quinone oxidoreductase subunit L
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: NAD(P)H-quinone oxidoreductase subunit M
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: NAD(P)H-quinone oxidoreductase subunit N
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: NAD(P)H-quinone oxidoreductase subunit O
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: Proton-translocating NADH-quinone dehydrogenase subunit P NdhP
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HUM (0-41)
  • Chain 'Q':
    Compound: Proton-translocating NADH-quinone dehydrogenase subunit Q NdhQ
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HUM (0-38)
  • Chain 'S':
    Compound: Tlr0636 protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: BCR, LMG, SF4

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6humA (A:)
    mesgidlqgqfisalqslglshdlakllwlplpmlmmlivatvgvlvavwlerkisaavq
    qrigpeyigplgilapladglklifkedvlpansdrwlftlgpavvvipvflsyiivpfg
    qnllisnlamgvflwialssiapigllmagyasnnkysllgglraaaqsisyeiplalav
    lavammsnglgtveiveqqsqygilswnvwrqpigflvfwiaalaecerlpfdlpeaeee
    lvagyqteyagmkfalfylgayvnlvlsallvsvlyfggwsfpipletianllgvsetnp
    flqiafavlgitmtlikayffvflaillrwtvprvridqlldlgwkfllpvglvnlllta
    glklafpvafgg
    

    Sequence, based on observed residues (ATOM records):
    >6humA (A:)
    idlqgqfisalqslglshdlakllwlplpmlmmlivatvgvlvavwlerkisaavqqrig
    peyigplgilapladglklifkedvlpansdrwlftlgpavvvipvflsyiivpfgqnll
    isnlamgvflwialssiapigllmagyasnnkysllgglraaaqsisyeiplalavlava
    mmsnglgtveiveqqsqwnvwrqpigflvfwiaalaecerlpfdlpeaeeelvagyqtey
    agmkfalfylgayvnlvlsallvsvlyfggwsfpipletinpflqiafavlgitmtlika
    yffvflaillrwtvprvridqlldlgwkfllpvglvnllltaglklafpvaf
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6humB (B:)
    mdlvtlagqlnagtilpetilivtllvvlladliqgrqadrwtpyfaivglggaiatmip
    lwtqpatisffgsfisdhlslffrglialsalgtilmsiryveqtgsslgefmtilltat
    vggmfiagaqelvfifvaletlsiasylltgytkrdsrsneaalkylligaassaiflyg
    ssllyglsgghtqlpaiaqalsseslglvvalvfviagisfkisavpfhqwtpdvyegap
    tpvvaflsvgskaagfalairfltlafpsvtdqwqliftvlailsmilgnvvalaqtsmk
    rmlayssigqagfvmigfvvgteagyasmlfyllvylfmnlgaftcvilfslrtgtdqis
    eyaglyqkdplltlglslcllslggipplagffgkiylfwagwqagayglvllglltsvi
    siyyyirvvkmmvvkepqemseavrnypevswssfglrplqvglvmtviatslagilanp
    lfnlvntavwdvpqlanqptvmevayqalspagks
    

    Sequence, based on observed residues (ATOM records):
    >6humB (B:)
    gtilpetilivtllvvlladliqgrqadrwtpyfaivglggaiatmiplwtqpatisffg
    sfisdhlslffrglialsalgtilmsiryveqtgsslgefmtilltatvggmfiagaqel
    vfifvaletlsiasylltgytkrdsrsneaalkylligaassaiflygssllyglsgght
    qlpaiaqalsseslglvvalvfviagisfkisavpfhqwtpdvyegaptpvvaflsvgsk
    aagfalairfltlafpsvtdqwqliftvlailsmilgnvvalaqtsmkrmlayssigqag
    fvmigfvvgteagyasmlfyllvylfmnlgaftcvilfslrtgtdqiseyaglyqkdpll
    tlglslcllslggipplagffgkiylfwagwqagayglvllglltsvisiyyyirvvkmm
    vvkepqemseavrnypelrplqvglvmtviatslagilanplfnlvntavwdvpq
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6humC (C:)
    mvaiprlrdtatvfvlsgyeyflgfliicslvpvlalaasallrpksgrmirlttyesgm
    epiggawiqfnvryymfalvfvifdvetvflypwavafhqlgllafiealifiailvval
    vyawrkralews
    

    Sequence, based on observed residues (ATOM records):
    >6humC (C:)
    vfvlsgyeyflgfliicslvpvlalaasallrpksgrmirlttyesgmepiggawiqfnv
    ryymfalvfvifdvetvflypwavafhqlgllafiealifiailvvalvyawrk
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6humD (D:)
    mstfpwlttiilfpivaalaipfipdptgkgrpirwyalavglidfalivyaftnfydln
    tpgmqlwesydwipeiglrwsvgadglsmplilltgfittlailaawpvtlkprlfyflm
    lamyggqiavfavqdmlvfflawelelipvylllaiwgghkrqyaatkfilytagsslfi
    lvaglamafygdtvsfdmqtlaakdyalgfqllvyagflvaygvklpivplhtwlpdahg
    eatapvhmllagillkmggyalirmnvdmlpaahakfapvlvilgvvniiyaaltsyaqr
    nlkrkiayssishigfvligiasftnlgmsgavlqmvshgligaslfflvgatydrthtl
    ileemggvgqkmkkifamftacslaslalpgmsgfvaelmvfigfatsdayslpfrvivv
    flaavgviltpiyllsmlreifygpenkelvehealvdaeprevfiiacllvpiigigly
    pklltqiydattgqviararevlptlaqqteqplgilpmvapqlkanaq
    

    Sequence, based on observed residues (ATOM records):
    >6humD (D:)
    wlttiilfpivaalaipfiptgkgrpirwyalavglidfalivyaftnfydpgmqlwesy
    dwipeiglrwsvgadglsmplilltgfittlailaawpvtlkprlfyflmlamyggqiav
    favqdmlvfflawelelipvylllaiwgghkrqyaatkfilytagsslfilvaglamafy
    gdtvsfdmqtlaakdyalgfqllvyagflvaygvklpivplhtwlpdahgeatapvhmll
    agillkmggyalirmnvdmlpaahakfapvlvilgvvniiyaaltsyaqrnlkrkiayss
    ishigfvligiasftnlgmsgavlqmvshgligaslfflvgatydrthtlileemggvgq
    kmkkifamftacslaslalpgmsgfvaelmvfigfatspfrvivvflaavgviltpiyll
    smlreifygpenkelvehealvdaeprevfiiacllvpiigiglypklltqiydattgqv
    iararevl
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6humE (E:)
    mqltyvlilaallfcigiyglvtsrnavrvlmsielllnavnlnligfanyldgqqikgq
    vfavfvitvaaaeaavglaiilaiyrnrdtvdmekfnllkw
    

    Sequence, based on observed residues (ATOM records):
    >6humE (E:)
    mqltyvlilaallfcigiyglvtsrnavrvlmsielllnavnlnligfanyldgqqikgq
    vfavfvitvaaaeaavglaiilaiyrnrdtvdmekfnllk
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6humF (F:)
    meplyqyawlipvlpllgalivgfgliafsettsklrrpsaifimalmaiamghsltlfw
    sqvqghlpytqmiewaaagnlhiamgyvidplaalmlvivttvaflvmlysdgymahdpg
    yvrffaylslfgssmlglvvspnlvqvyifwelvgmcsylligfwydrksaaeaaqkafv
    tnrvgdfglllgmvglfwatgtfdfagmgdrltelvntgllspslaailailvflgpvak
    saqfplhvwlpdamegptpisalihaatmvaagvfliarmfpvfeqlpqvmttiawtgaf
    tafmgatiaitqndikkslaystisqlgymvmgmgvgaysaglfhlmthayfkamlflgs
    gsvihsmegvvghnpdlaqdmrymgglrkympitgatflvgclaisgvppfagfwskdei
    lgavfhanpamwlltwltagltafymfrmyfmtfegkfrnvpperqehhdhhshhaavph
    espwtmtlplvvlaipstligfvgtpfnnlfevfihapgeekvaehavdlteflilggss
    vgiglmgitvaylmylkgtpspqaiakaiqplyqfslhkwyfdelyeavfikgcrrlarq
    vlevdynvvdgvvnltgfvtmvtgeglkylqngraqfyalivllavlgfvifsvqt
    

    Sequence, based on observed residues (ATOM records):
    >6humF (F:)
    plyqyawlipvlpllgalivgfgliafsettsklrrpsaifimalmaiamghsltlfwsq
    vqghlpytqmiewaaagnlhiamgyvidplaalmlvivttvaflvmlysdgymahdpgyv
    rffaylslfgssmlglvvspnlvqvyifwelvgmcsylligfwydrksaaeaaqkafvtn
    rvgdfglllgmvglfwatgtfdfagmgdrltelvntgllspslaailailvflgpvaksa
    qfplhvwlpdamegptpisalihaatmvaagvfliarmfpvfeqlpqvmttiawtgafta
    fmgatiaitqndikkslaystisqlgymvmgmgvgaysaglfhlmthayfkamlflgsgs
    vihsmeaqdmrymgglrkympitgatflvgclaisgvppfagfwskdeilgavfhanpam
    wlltwltagltafymfrmyfmtfegkfrnvespwtmtlplvvlaipstligfvgtpfnnl
    fevfihapeflilggssvgiglmgitvaylmylkgtpspqaiakaiqplyqfslhkwyfd
    elyeavfikgcrrlarqvlevdynvvdgvvnltgfvtmvtgeglkylqngraqfyalivl
    lavlgfvifsv
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6humG (G:)
    mdlatltqtitffalaaaviiaalgvvlldnvvysafllggvflsiaglyilmnadfvsa
    aqiliyvgavnvlilfaimlvnkretytpvpgrwlrqggaavvslgvfalltkmilqtpw
    qlssvpptpdsittigqhffsdfllpfelasvlllmaligavvlarrelvlepepilgee
    vvpplelperprepvalsek
    

    Sequence, based on observed residues (ATOM records):
    >6humG (G:)
    mdlatltqtitffalaaaviiaalgvvlldnvvysafllggvflsiaglyilmnadfvsa
    aqiliyvgavnvlilfaimlvnkretytpvpgrwlrqggaavvslgvfalltkmilqtpw
    qlssvpptpdsittigqhffsdfllpfelasvlllmaligavvlarre
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6humH (H:)
    mpkietrtepmvinmgphhpsmhgvlrlmvtldgedvidcepvigylhrgmekiaenrtn
    imfipyvsrwdyaagmfneavtvnapeklagipvpkrasyirvimlelnrianhllwlgp
    fladvgaqtpffyifrereyiydlfeaatgmrfinnnyfriggvaadltygwvtkcrdfc
    dyflpkvdeyerlitnnpifvrrlqgvgkisreeainwglsgpmlrasgvkwdlrkvdhy
    ecyddfdwdvpvategdclaryivriqemresvkiirqaldglpggpyenleakrmlega
    ksewngfdyqyigkklsptfkipkgehyvrvesgkgelgiyligddnvfpwrwkirppdf
    nnlqvlpqllkgmkvadivailgsidvimgsvdr
    

    Sequence, based on observed residues (ATOM records):
    >6humH (H:)
    pkietrtepmvinmgphhpsmhgvlrlmvtldgedvidcepvigylhrgmekiaenrtni
    mfipyvsrwdyaagmfneavtvnapeklagipvpkrasyirvimlelnrianhllwlgpf
    ladvgaqtpffyifrereyiydlfeaatgmrfinnnyfriggvaadltygwvtkcrdfcd
    yflpkvdeyerlitnnpifvrrlqgvgkisreeainwglsgpmlrasgvkwdlrkvdhye
    cyddfdwdvpvategdclaryivriqemresvkiirqaldglpggpyenleakrmlegak
    sewngfdyqyigkklsptfkipkgehyvrvesgkgelgiyligddnvfpwrwkirppdfn
    nlqvlpqllkgmkvadivailgsidvimgsvdr
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6humI (I:)
    mkflnqitnyakeavqsakyigqglsvtfdhmrrrpitvqypyeklipserfrgrihfef
    dkciacevcvrvcpinlpvvdwvfnkelkkkelkhysidfgvcifcancveycptnclsv
    teeyelatydrhelnydsvamgripykvtqdpmvtpirefaylpagvmsghdlpagaqra
    gerpeaiantakssen
    

    Sequence, based on observed residues (ATOM records):
    >6humI (I:)
    kflnqitnyakeavqsakyigqglsvtfdhmrrrpitvqypyeklipserfrgrihfefd
    kciacevcvrvcpinlpvvdwvfnkelkkkelkhysidfgvcifcancveycptnclsvt
    eeyelatydrhelnydsvamgripykvtqdpmvtpirefaylpagvmsghdlpagaqrag
    erpeaiantakss
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6humJ (J:)
    msdtpeapiveagpvgrllqsqnlsveslgrdasgvemikvdrdrllavcqtlyadgfny
    lrcqaaydsgpgqdlvstyhliklsdnadrppevrikvfvprddprvpsvywiwktadwq
    eresydmfgivyeghpnlkrilmpedwvgwplrkdyitpdfyelqeay
    

    Sequence, based on observed residues (ATOM records):
    >6humJ (J:)
    gpvgrllqsqnlsveslgrdasgvemikvdrdrllavcqtlyadgfnylrcqaaydsgpg
    qdlvstyhliklsdnadrppevrikvfvprddprvpsvywiwktadwqeresydmfgivy
    eghpnlkrilmpedwvgwplrkdyitpdfyelqeay
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6humK (K:)
    mtnttspailnpiarpevpqelaeniiltslndvydwarlsslwplmygtaccfiefaam
    igsrfdfdrfglvprnsprqadliitsgtitmkmapalvrlyeqmpspkyviamgactit
    ggmfssdsysavrgvdklipvdvylpgcpprpeaimdaivklrkkianehinergnlaqt
    hrlftakhkmkpvppiltgqylnapsrqapppalaaamgiavpalgeavsettsvae
    

    Sequence, based on observed residues (ATOM records):
    >6humK (K:)
    pailnpiarpevpqelaeniiltslndvydwarlsslwplmygtaccfiefaamigsrfd
    fdrfglvprnsprqadliitsgtitmkmapalvrlyeqmpspkyviamgactitggmfss
    dsysavrgvdklipvdvylpgcpprpeaimdaivklrkkianehinergnlaqthrlfta
    khkmkpvppiltgqylnapsrqappp
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6humL (L:)
    mavstellvlgvygalaglyllvvpaivyaylnarwyvassferafmyflvtfffpglll
    lapfinfrpqprslns
    

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6humM (M:)
    mllksttrhvhiyaghvvdgevhpdtetltlnvdpdnelewneaalakveakfrelvana
    agedlteynlrrigsdlehfirsllmqgeigynlnsrvrnyslgiprvnhs
    

    Sequence, based on observed residues (ATOM records):
    >6humM (M:)
    mllksttrhvhiyaghvvdgevhpdtetltlnvdpdnelewneaalakveakfrelvana
    agedlteynlrrigsdlehfirsllmqgeigynlnsrvrnyslgiprvnh
    

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6humN (N:)
    mgllagyqfvkdlesagalalfvppeggfegryqrrlrskgyttlpmsapglgdlaaylt
    qehgirpahtgkedirvyfqpplvtyhlenlppnakglvlwlidgkrlskqefaylaqlt
    qtlpkfkvvvevggdrvvrwepladwvaaa
    

    Sequence, based on observed residues (ATOM records):
    >6humN (N:)
    gllagyqfvkdlesagalalfvppeggfegryqrrlrskgyttlpmsapglgdlaayltq
    ehgirpahtgkedirvyfqpplvtyhlenlppnakglvlwlidgkrlskqefaylaqltq
    tlpkfkvvvevggdrvvrwepladwva
    

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6humO (O:)
    maikkgdlvkvvaeklanslealasdhryppylfegrgevvdirgdyaqikfpvptptvw
    lrldqlevaq
    

    Sequence, based on observed residues (ATOM records):
    >6humO (O:)
    aikkgdlvkvvaeklanslealasdhryppylfegrgevvdirgdyaqikfpvptptvwl
    rldqleva
    

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6humP (P:)
    avisvkpillamtpvfillclffgtrngfydtdqyhgnaaah
    

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6humQ (Q:)
    atdfraimkfdgadspamiaisavlilgfiagliwwalh
    

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6humS (S:)
    mirpiadtypllplskaqmgqrqeiinshkrlwdktmatdlimtilpgmtvkvtnpndty
    yqfqgivqritdgkvavlfeggnwdklvtfqaselepvvvtpkekakakk
    

    Sequence, based on observed residues (ATOM records):
    >6humS (S:)
    ilpgmtvkvtnpndtyyqfqgivqritdgkvavlfeggnwdklvtfqaselepvv