PDB entry 6ht5

View 6ht5 on RCSB PDB site
Description: oct4/sox2:utf1 structure
Deposited on 2018-10-03, released 2019-10-23
The last revision was dated 2019-10-23, with a file datestamp of 2019-10-18.
Experiment type: XRAY
Resolution: 3.45 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA (5'-d(p*cp*cp*tp*cp*ap*tp*tp*gp*tp*tp*ap*tp*gp*cp*tp*ap*gp*tp*gp*ap*ap*g)-3')
    Species: MUS MUSCULUS, synthetic [TaxId:10090]
  • Chain 'B':
    Compound: DNA (5'-d(*tp*tp*cp*ap*cp*tp*ap*gp*cp*ap*tp*ap*ap*cp*ap*ap*tp*gp*ap*gp*g)-3')
    Species: MUS MUSCULUS, synthetic [TaxId:10090]
  • Chain 'D':
    Compound: transcription factor sox-2
    Species: Mus musculus [TaxId:10090]
    Gene: Sox2, Sox-2
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: POU domain, class 5, transcription factor 1
    Species: Mus musculus [TaxId:10090]
    Gene: Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
    Database cross-references and differences (RAF-indexed):
    • Uniprot P20263 (2-End)
      • expression tag (0-1)
      • engineered mutation (49)
      • engineered mutation (62)
      • engineered mutation (85)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ht5D (D:)
gamdrvkrpmnafmvwsrgqrrkmaqenpkmhnseiskrlgaewkllsetekrpfideak
rlralhmkehpdykyrprrktkt

    Sequence, based on observed residues (ATOM records):
    >6ht5D (D:)
drvkrpmnafmvwsrgqrrkmaqenpkmhnseiskrlgaewkllsetekrpfideakrlr
alhmkehpdykyrprrk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ht5E (E:)
gadmkalqkeleqfakllkqkritlgytqadvgltlgvlfgkvfsqttisrfealqlslk
nmsklrpllekwveeadnnenlqeisksetlvqarkrkrtsienrvrwsletmflkspkp
slqqithianqlglekdvvrvwfsnrrqkgkrss

    Sequence, based on observed residues (ATOM records):
    >6ht5E (E:)
gadmkalqkeleqfakllkqkritlgytqadvgltlgvlfgkvfsqttisrfealqlslk
nmsklrpllekwveeadnnenlqeisksetlvqarkrkrts