PDB entry 6hom

View 6hom on RCSB PDB site
Description: drosophila not4 cbm peptide bound to human caf40
Deposited on 2018-09-17, released 2019-02-06
The last revision was dated 2019-02-13, with a file datestamp of 2019-02-08.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CCR4-NOT transcription complex subunit 9
    Species: Homo sapiens [TaxId:9606]
    Gene: CNOT9, RCD1, RQCD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92600 (6-272)
      • expression tag (0-5)
  • Chain 'B':
    Compound: CCR4-NOT transcription complex subunit 4, isoform L
    Species: DROSOPHILA MELANOGASTER, synthetic [TaxId:7227]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: CCR4-NOT transcription complex subunit 9
    Species: Homo sapiens [TaxId:9606]
    Gene: CNOT9, RCD1, RQCD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92600 (6-272)
      • expression tag (2-5)
  • Chain 'D':
    Compound: CCR4-NOT transcription complex subunit 4, isoform L
    Species: DROSOPHILA MELANOGASTER, synthetic [TaxId:7227]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, TRS, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6homA (A:)
gphmlerekiyqwinelsspetrenallelskkresvpdlapmlwhsfgtiaallqeivn
iypsinpptltahqsnrvcnalallqcvashpetrsaflaahiplflypflhtvsktrpf
eylrltslgvigalvktdeqevinflltteiiplclrimesgselsktvatfilqkilld
dtglayicqtyerfshvamilgkmvlqlskepsarllkhvvrcylrlsdnprarealrqc
lpdqlkdttfaqvlkddtttkrwlaqlvknlqe

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6homB (B:)
dddlgfdpfvetqkglaelmenevvq

    Sequence, based on observed residues (ATOM records):
    >6homB (B:)
ddlgfdpfvetqkglaelmenevvq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6homC (C:)
gphmlerekiyqwinelsspetrenallelskkresvpdlapmlwhsfgtiaallqeivn
iypsinpptltahqsnrvcnalallqcvashpetrsaflaahiplflypflhtvsktrpf
eylrltslgvigalvktdeqevinflltteiiplclrimesgselsktvatfilqkilld
dtglayicqtyerfshvamilgkmvlqlskepsarllkhvvrcylrlsdnprarealrqc
lpdqlkdttfaqvlkddtttkrwlaqlvknlqe

    Sequence, based on observed residues (ATOM records):
    >6homC (C:)
hmlerekiyqwinelsspetrenallelskkresvpdlapmlwhsfgtiaallqeivniy
psinpptltahqsnrvcnalallqcvashpetrsaflaahiplflypflhtvsktrpfey
lrltslgvigalvktdeqevinflltteiiplclrimesgselsktvatfilqkillddt
glayicqtyerfshvamilgkmvlqlskepsarllkhvvrcylrlsdnprarealrqclp
dqlkdttfaqvlkddtttkrwlaqlvknlqe

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6homD (D:)
dddlgfdpfvetqkglaelmenevvq