PDB entry 6hoi

View 6hoi on RCSB PDB site
Description: structure of beclin1 lir motif bound to gabarapl1
Deposited on 2018-09-17, released 2019-02-27
The last revision was dated 2019-07-10, with a file datestamp of 2019-07-05.
Experiment type: XRAY
Resolution: 1.14 Å
R-factor: N/A
AEROSPACI score: 0.7 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Gamma-aminobutyric acid receptor-associated protein-like 1
    Species: Homo sapiens [TaxId:9606]
    Gene: GABARAPL1, GEC1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9H0R8 (6-122)
      • expression tag (5)
  • Chain 'B':
    Compound: Gamma-aminobutyric acid receptor-associated protein-like 1
    Species: Homo sapiens [TaxId:9606]
    Gene: GABARAPL1, GEC1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Beclin-1
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Beclin-1
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: EDO, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6hoiA (A:)
gptmgsmkfqykedhpfeyrkkegekirkkypdrvpvivekapkarvpdldkrkylvpsd
ltvgqfyflirkrihlrpedalfffvnntipptsatmgqlyednheedyflyvaysdesv
ygk

    Sequence, based on observed residues (ATOM records):
    >6hoiA (A:)
smkfqykedhpfeyrkkegekirkkypdrvpvivekapkarvpdldkrkylvpsdltvgq
fyflirkrihlrpedalfffvnntipptsatmgqlyednheedyflyvaysdesvygk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6hoiB (B:)
gptmgsmkfqykedhpfeyrkkegekirkkypdrvpvivekapkarvpdldkrkylvpsd
ltvgqfyflirkrihlrpedalfffvnntipptsatmgqlyednheedyflyvaysdesv
ygk

    Sequence, based on observed residues (ATOM records):
    >6hoiB (B:)
mkfqykedhpfeyrkkegekirkkypdrvpvivekapkarvpdldkrkylvpsdltvgqf
yflirkrihlrpedalfffvnntipptsatmgqlyednheedyflyvaysdesvygk

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6hoiF (F:)
sansftlige

    Sequence, based on observed residues (ATOM records):
    >6hoiF (F:)
sftlige

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6hoiG (G:)
sansftlige

    Sequence, based on observed residues (ATOM records):
    >6hoiG (G:)
ansftlige