PDB entry 6hmf

View 6hmf on RCSB PDB site
Description: d-family dna polymerase - dp1 subunit (3'-5' proof-reading exonuclease) h451 proof-reading deficient variant
Deposited on 2018-09-12, released 2019-01-30
The last revision was dated 2019-01-30, with a file datestamp of 2019-01-25.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase II small subunit
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Gene: polB, PYRAB01210, PAB2266
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9V2F3 (Start-474)
      • engineered mutation (306)
  • Chain 'B':
    Compound: DNA polymerase II small subunit
    Species: Pyrococcus abyssi (strain GE5 / Orsay) [TaxId:272844]
    Gene: polB, PYRAB01210, PAB2266
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9V2F3 (Start-474)
      • engineered mutation (306)
  • Heterogens: FE, ZN, ACT, CAC, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6hmfA (A:)
gengesvvvldkygypilyapeeigeekeyskyedvviewnpsvtpvqieknyevkfdvr
qvklrppkvkngsgkegeiiveayaslfksrlsklkrilrenpeisnvvdigklnyvsgd
eevtiiglvnskretnrglifevedktgivkvflpkdsedyreafkvlpdavvafkgfys
kkgiffankfylpdvplyrkqkppleekvyailisdihvgsrefcekaflkflewlnghv
eskeeeeivsrvkyliiagdvvdgigiypgqysdlvipdifdqyealanllanvpehitm
figpgnadaarpaipqpefykeyakpiyklknaiiisnpavirlhgrdfliahgrgiedv
vsfvpglthhkpglpmvellkmrhlaptfggkvpiapdpedllvieevpdlvqmghvhvy
davvyrgvqlvnsatwqaqtefqkmvnivptpakvpvvdvesarvvkvldfsgwc

    Sequence, based on observed residues (ATOM records):
    >6hmfA (A:)
vvldkygypilyyskyedvviewnpsvtpvqieknyevkfdvrqvveayaslfksrlskl
krilrenpeisnvvdigklnyvsgdeevtiiglvnskretnrglifevedktgivkvflp
kdsedyreafkvlpdavvafkgfyskkgiffankfylpdvplyrkqkppleekvyailis
dihvgsrefcekaflkflewlnghveskeeeeivsrvkyliiagdvvdgigiypgqysdl
vipdifdqyealanllanvpehitmfigpgnadaarpaipqpefykeyakpiyklknaii
isnpavirlhgrdfliahgrgiedvvsfvpglthhkpglpmvellkmrhlaptfggkvpi
apdpedllvieevpdlvqmghvhvydavvyrgvqlvnsatwqaqtefqkmvnivptpakv
pvvdvesarvvkvldfsgwc

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6hmfB (B:)
gengesvvvldkygypilyapeeigeekeyskyedvviewnpsvtpvqieknyevkfdvr
qvklrppkvkngsgkegeiiveayaslfksrlsklkrilrenpeisnvvdigklnyvsgd
eevtiiglvnskretnrglifevedktgivkvflpkdsedyreafkvlpdavvafkgfys
kkgiffankfylpdvplyrkqkppleekvyailisdihvgsrefcekaflkflewlnghv
eskeeeeivsrvkyliiagdvvdgigiypgqysdlvipdifdqyealanllanvpehitm
figpgnadaarpaipqpefykeyakpiyklknaiiisnpavirlhgrdfliahgrgiedv
vsfvpglthhkpglpmvellkmrhlaptfggkvpiapdpedllvieevpdlvqmghvhvy
davvyrgvqlvnsatwqaqtefqkmvnivptpakvpvvdvesarvvkvldfsgwc

    Sequence, based on observed residues (ATOM records):
    >6hmfB (B:)
vvldkygypilyyskyedvviewnpsvtpvqieknyevkfdvrqvklrppkveayaslfk
srlsklkrilrenpeisnvvdigklnyvsgdeevtiiglvnskretnrglifevedktgi
vkvflpkdsedyreafkvlpdavvafkgfyskkgiffankfylpdvplyrkqkppleekv
yailisdihvgsrefcekaflkflewlnghveskeeeeivsrvkyliiagdvvdgigiyp
gqysdlvipdifdqyealanllanvpehitmfigpgnadaarpaipqpefykeyakpiyk
lknaiiisnpavirlhgrdfliahgrgiedvvsfvpgkpglpmvellkmrhlaptfggkv
piapdpedllvieevpdlvqmghvhvydavvyrgvqlvnsatwqaqtefqkmvnivptpa
kvpvvdvesarvvkvldfsgwc