PDB entry 6hma

View 6hma on RCSB PDB site
Description: improved model derived from cryo-em map of staphylococcus aureus large ribosomal subunit
Deposited on 2018-09-12, released 2018-11-14
The last revision was dated 2020-05-27, with a file datestamp of 2020-05-22.
Experiment type: EM
Resolution: 2.65 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: 50S ribosomal protein L33
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain '2':
    Compound: 50S ribosomal protein L34
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain '3':
    Compound: 50S ribosomal protein L35
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: 50S ribosomal protein L36
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'A':
    Compound: 23S ribosomal RNA
    Species: Staphylococcus aureus [TaxId:1280]
  • Chain 'B':
    Compound: 5S ribosomal RNA
    Species: Staphylococcus aureus [TaxId:1280]
  • Chain 'C':
    Compound: 50S ribosomal protein L2
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 50S ribosomal protein L3
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 50S ribosomal protein L4
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 50S ribosomal protein L5
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 50S ribosomal protein L6
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 50S ribosomal protein L13
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 50S ribosomal protein L14
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 50S ribosomal protein L15
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 50S ribosomal protein L16
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 50S ribosomal protein L17
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 50S ribosomal protein L18
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 50S ribosomal protein L19
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 50S ribosomal protein L20
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 50S ribosomal protein L21
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 50S ribosomal protein L22
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 50S ribosomal protein L23
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 50S ribosomal protein L24
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 50S ribosomal protein L25
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 50S ribosomal protein L27
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 50S ribosomal protein L28
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: 50S ribosomal protein L29
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 50S ribosomal protein L30
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 50S ribosomal protein L32
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records:
    >6hma1 (1:)
    rvnvtlactecgdrnyittknkrnnperiemkkycprlnkytlhret
    

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records:
    >6hma2 (2:)
    vkrtyqpnkrkhskvhgfrkrmstkngrkvlarrrrkgrkvls
    

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records:
    >6hma3 (3:)
    pkmkthrgaakrvkrtasgqlkrsraftshlfankstkqkrqlrkarlvsksdmkrvkql
    layk
    

  • Chain '4':
    Sequence; same for both SEQRES and ATOM records:
    >6hma4 (4:)
    mkvrpsvkpicekckvikrkgkvmvicenpkhkqrqg
    

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaC (C:)
    aikkykpitngrrnmtsldfaeitkttpeksllkplpkkagrnnqgkltvrhhggghkrq
    yrvidfkrnkdginakvdsiqydpnrsanialvvyadgekryiiapkglevgqivesgae
    adikvgnalplqnipvgtvvhnielkpgkggqiarsagasaqvlgkegkyvlirlrsgev
    rmilstcratigqvgnlqhelvnvgkagrsrwkgirptvrgsvmnpndhphgggegrapi
    grpspmspwgkptlgkktrrgkkssdklivrgrk
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaD (D:)
    tkgilgrkigmtqvfgengelipvtvveakenvvlqkktvevdgynaiqvgfedkkaykk
    daksnkyankpaeghakkadaapkrfirefrnvdvdayevgqevsvdtfvagdvidvtgv
    skgkgfqgaikrhgqsrgpmshgshfhrapgsvgmasdasrvfkgqkmpgrmggntvtvq
    nlevvqvdtenkvilvkgnvpgpkkglveirtsik
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaE (E:)
    anydvlkldgtksgsielsdavfgiepnnsvlfeainlqraslrqgthavknrsavsggg
    rkpwkqkgtgrarqgtirapqwrgggivfgptprsyaykmpkkmrrlalrsalsfkaqen
    gltvvdafnfeapktkefknvlstleqpkkvlvvtenedvnvelsarnipgvqvttaqgl
    nvlditnadslviteaaakkveevlg
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaF (F:)
    kfnyssvmevpkidkivvnmgvgdavqnskvldnaveelelitgqkplvtkakksiatfr
    lregmpigakvtlrgermyefldklisvslprvrdfqgvskkafdgrgnytlgvkeqlif
    peidydkvskvrgmdivivttantdeearellanfgmp
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaG (G:)
    srvgkkiidipsdvtvtfdgnhvtvkgpkgelsrtlnermtfkqeentievvrpsdsked
    rtnhgttrallnnmvqgvsqgyvkvlelvgvgyraqmqgkdlilnvgyshpveikaeeni
    tfsvekntvvkvegiskeqvgalasnirsvrppepykgkgiryqgeyvrrkegkt
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaH (H:)
    mrqtfmanesnierkwyvidaegqtlgrlssevasilrgknkvtytphvdtgdyvivina
    skieftgnketdkvyyrhsnhpggiksitagelrrtnperliensikgmlpstrlgekqg
    kklfvyggaehphaaqqpenyelrg
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaI (I:)
    miqqetrlkvadnsgarevltikvlggsgrktanigdvivctvknatpggvvkkgdvvka
    vivrtksgvrrndgsyikfdenacviirddkgprgtrifgpvarelregnfmkivslape
    vl
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaJ (J:)
    mklhelkpaegsrkernrvgrgvatgngktsgrghkgqkarsgggvrpgfeggqlplfrr
    lpkrgftninrkeyaivnldqlnkfedgtevtpallvesgvvkneksgikilgngsldkk
    ltvkahkfsasaaeaidakggahevi
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaK (K:)
    mllpkrvkyrrqhrpkttgrskggnyvtfgefglqatttswitsrqiesariamtrymkr
    ggkvwikifphtpytkkplevrmgagkgavegwiavvkpgrilfevagvseevarealrl
    ashklpvktkfvkreel
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaL (L:)
    yrklgrtsdqrkamlrdlatsliiseriettearakevrsvveklitlgkkgdlasrrna
    aktlrnveilnedettqtalqklfgeiaeryterqggytrilkqgprrgdgaesviielv
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaM (M:)
    miskidknkvrlkrharvrtnlsgtaekprlnvyrsnkhiyaqiiddnkgvtlaqasskd
    sdiattatkvelatkvgeaiakkaadkgikeivfdrggylyhgrvkalaeaaresglef
    

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6hmaN (N:)
    mtnhklieavtksqlrtdlpsfrpgdtlrvhvriiegtreriqvfegvvikrrgggvset
    ftvrkissgvgvertfplhtpkiekievkrrgkvrraklyylrslrgkaariqeir
    

    Sequence, based on observed residues (ATOM records):
    >6hmaN (N:)
    tnhklieavtksqlrtdlpsfrpgdtlrvhvriiegtreriqvfegvvikrrgggvsetf
    tvrkissgvgvertfplhtpkiekievkrrgkvrraklyylrslrgkaariqei
    

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaO (O:)
    prvkggtvtrarrkktiklakgyfgskhtlykvakqqvmksgqyafrdrrqrkrdfrklw
    itrinaaarqhemsysrlmnglkkagidinrkmlseiaisdekafaqlvtkakdal
    

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaP (P:)
    mfaiietggkqikveegqeifvekldvnegdtftfdkvlfvggdsvkvgaptvegatvta
    tvnkqgrgkkitvftykrrknskrkkghrqpytkltidkina
    

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaQ (Q:)
    meakavartiriaprkvrlvldlirgknaaeaiailkltnkasspviekvlmsalanaeh
    nydmntdelvvkeayanegptlkrfrpraqgrasainkrtshitivvsdgke
    

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaR (R:)
    eardilkrpviteksseamaedkytfdvdtrvnktqvkmaveeifnvkvasvnimnykpk
    kkrmgryqgytnkrrkaivtlkegsidlf
    

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaS (S:)
    hikkgdnvkviagkdkgkegkviatlpkkdrvvvegvnimkkhqkptqlnpeggiletea
    aihvsnvqlldpktneptrvgykfvdgkkvriakksgeeiksn
    

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaT (T:)
    aslksiirqgkqtrsdlkqlrksgkvpavvygygtknvsvkvdevefikvirevgrngvi
    elgvgsktikvmvadyqfdplknqithidflain
    

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaU (U:)
    vsstkngrdseskrlgakradgqfvtggsilyrqrgtkiypgenvgrggddtlfakidgv
    vkferkgrdkkqvsvyava
    

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaV (V:)
    astgnrrshalnstkrrwnanlqkvrilvdgkpkkvwvsaralksgkvt
    

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaW (W:)
    kakeirdlttseieeqiksskeelfnlrfqlatgqleetarirtvrktiarlktvarere
    ieqskan
    

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaX (X:)
    aklqitltrsvigrpetqrktvealglkktnssvvvednpairgqinkvkhlvtveek
    

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records:
    >6hmaZ (Z:)
    avpkrrtsktrknkrrthfkisvpgmtecpncgeyklshrvckncgsy