PDB entry 6hjq

View 6hjq on RCSB PDB site
Description: structure of full-length influenza hemagglutinin (a/duck/alberta/35/76) in complex with fisw84 fab fragment
Deposited on 2018-09-04, released 2018-09-26
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: EM
Resolution: 4.1 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1) [TaxId:352520]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1) [TaxId:352520]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1) [TaxId:352520]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1) [TaxId:352520]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1) [TaxId:352520]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1) [TaxId:352520]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Heavy chain of FISW84 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HJQ (0-215)
  • Chain 'H':
    Compound: Light chain of FISW84 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HJQ (0-213)
  • Chain 'I':
    Compound: Heavy chain of FISW84 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HJQ (0-215)
  • Chain 'J':
    Compound: Light chain of FISW84 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HJQ (0-213)
  • Chain 'K':
    Compound: Heavy chain of FISW84 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HJQ (0-215)
  • Chain 'L':
    Compound: Light chain of FISW84 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HJQ (0-213)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqA (A:)
dticvgyhannstdtvdtvleknvtvthsvnlledshngklcslngiaplqlgkcnvagw
llgnpecdllltanswsyiietsnsengtcypgefidyeelreqlssvssfekfeifpka
sswpnhettkgvtaacsysgassfyrnllwitkkgtsypklsksytnnkgkevlvlwgvh
hppsvseqqslyqnadayvsvgsskynrrfapeiaarpkvrgqagrmnyywtlldqgdti
tfeatgnliapwyafalnkgsdsgiitsdapvhncdtrcqtphgalnsslpfqnvhpiti
gecpkyvkstklrmatglrnvpsi

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqB (B:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaidgitskvnsviekmn
tqftavgkefnnlerrienlnkkvddgfldvwtynaellvllenertldfhdsnvrnlye
kvksqlrnnakeigngcfefyhkcddecmesvkngtydypkyseesklnreeidgvkles
mgvyqilaiystvasslvllvsl

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqC (C:)
dticvgyhannstdtvdtvleknvtvthsvnlledshngklcslngiaplqlgkcnvagw
llgnpecdllltanswsyiietsnsengtcypgefidyeelreqlssvssfekfeifpka
sswpnhettkgvtaacsysgassfyrnllwitkkgtsypklsksytnnkgkevlvlwgvh
hppsvseqqslyqnadayvsvgsskynrrfapeiaarpkvrgqagrmnyywtlldqgdti
tfeatgnliapwyafalnkgsdsgiitsdapvhncdtrcqtphgalnsslpfqnvhpiti
gecpkyvkstklrmatglrnvpsi

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqD (D:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaidgitskvnsviekmn
tqftavgkefnnlerrienlnkkvddgfldvwtynaellvllenertldfhdsnvrnlye
kvksqlrnnakeigngcfefyhkcddecmesvkngtydypkyseesklnreeidgvkles
mgvyqilaiystvasslvllvsl

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqE (E:)
dticvgyhannstdtvdtvleknvtvthsvnlledshngklcslngiaplqlgkcnvagw
llgnpecdllltanswsyiietsnsengtcypgefidyeelreqlssvssfekfeifpka
sswpnhettkgvtaacsysgassfyrnllwitkkgtsypklsksytnnkgkevlvlwgvh
hppsvseqqslyqnadayvsvgsskynrrfapeiaarpkvrgqagrmnyywtlldqgdti
tfeatgnliapwyafalnkgsdsgiitsdapvhncdtrcqtphgalnsslpfqnvhpiti
gecpkyvkstklrmatglrnvpsi

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqF (F:)
glfgaiagfieggwtgmidgwygyhhqneqgsgyaadqkstqnaidgitskvnsviekmn
tqftavgkefnnlerrienlnkkvddgfldvwtynaellvllenertldfhdsnvrnlye
kvksqlrnnakeigngcfefyhkcddecmesvkngtydypkyseesklnreeidgvkles
mgvyqilaiystvasslvllvsl

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqG (G:)
evqllesggglvqpggslrlscaasgftfssygmawvrqapgkglewvsfisatglstyf
adsvkgrftisrdttkntlylqmnslraddtavyfcarmrrtmiafggndfwgqgtlvtv
ssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglys
lssvvtvpssslgtqtyicnvnhkpsntkvdkrvep

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqH (H:)
evvmtqspatlsvspgegatlscrasqsvntnvawyqqkpgqaprlliygastratgipa
rfsgsgsgteftltistlqsedfavyycqqysnwppitfgqgtrleikrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrge

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqI (I:)
evqllesggglvqpggslrlscaasgftfssygmawvrqapgkglewvsfisatglstyf
adsvkgrftisrdttkntlylqmnslraddtavyfcarmrrtmiafggndfwgqgtlvtv
ssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglys
lssvvtvpssslgtqtyicnvnhkpsntkvdkrvep

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqJ (J:)
evvmtqspatlsvspgegatlscrasqsvntnvawyqqkpgqaprlliygastratgipa
rfsgsgsgteftltistlqsedfavyycqqysnwppitfgqgtrleikrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrge

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqK (K:)
evqllesggglvqpggslrlscaasgftfssygmawvrqapgkglewvsfisatglstyf
adsvkgrftisrdttkntlylqmnslraddtavyfcarmrrtmiafggndfwgqgtlvtv
ssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglys
lssvvtvpssslgtqtyicnvnhkpsntkvdkrvep

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6hjqL (L:)
evvmtqspatlsvspgegatlscrasqsvntnvawyqqkpgqaprlliygastratgipa
rfsgsgsgteftltistlqsedfavyycqqysnwppitfgqgtrleikrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrge