PDB entry 6hdv
View 6hdv on RCSB PDB site
Description: The crystal structure of intact afifavidin apo form
Class: biotin binding protein
Keywords: avidin-biotin system, bacterial avidins, self assembly, dimeric avidins, biotin binding protein
Deposited on
2018-08-20, released
2018-11-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-12-26, with a file datestamp of
2018-12-21.
Experiment type: XRAY
Resolution: 2.16 Å
R-factor: N/A
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Afifavidin
Species: Afifella pfennigii [TaxId:209897]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6hdva_ - Chain 'B':
Compound: Afifavidin
Species: Afifella pfennigii [TaxId:209897]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6hdvb_ - Chain 'C':
Compound: Afifavidin
Species: Afifella pfennigii [TaxId:209897]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6hdvc_ - Chain 'D':
Compound: Afifavidin
Species: Afifella pfennigii [TaxId:209897]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6hdvd_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6hdvA (A:)
maqdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyp
lvgltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqq
gsdtftlvnkamketpkm
Sequence, based on observed residues (ATOM records): (download)
>6hdvA (A:)
qdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyplv
gltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqqgs
dtftlvnkamketpkm
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6hdvB (B:)
maqdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyp
lvgltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqq
gsdtftlvnkamketpkm
Sequence, based on observed residues (ATOM records): (download)
>6hdvB (B:)
qdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyplv
gltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqqgs
dtftlvnkamketpkm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>6hdvC (C:)
maqdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyp
lvgltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqq
gsdtftlvnkamketpkm
Sequence, based on observed residues (ATOM records): (download)
>6hdvC (C:)
qdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyplv
gltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqqgs
dtftlvnkamketpkm
- Chain 'D':
Sequence, based on SEQRES records: (download)
>6hdvD (D:)
maqdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyp
lvgltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqq
gsdtftlvnkamketpkm
Sequence, based on observed residues (ATOM records): (download)
>6hdvD (D:)
qdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyplv
gltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqqgs
dtftlvnkamketpkm