PDB entry 6hdt

View 6hdt on RCSB PDB site
Description: crystal structure of short afifavidin - biotin complex
Class: biotin binding protein
Keywords: avidin, biotin, high affinity systems, dimeric avidins, biotin binding protein
Deposited on 2018-08-19, released 2018-11-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-12-26, with a file datestamp of 2018-12-21.
Experiment type: XRAY
Resolution: 1.54 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Short afifavidin
    Species: Afifella pfennigii [TaxId:209897]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HDT
    Domains in SCOPe 2.08: d6hdta_
  • Chain 'B':
    Compound: Short afifavidin
    Species: Afifella pfennigii [TaxId:209897]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HDT
    Domains in SCOPe 2.08: d6hdtb_
  • Chain 'C':
    Compound: Short afifavidin
    Species: Afifella pfennigii [TaxId:209897]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HDT
    Domains in SCOPe 2.08: d6hdtc_
  • Chain 'D':
    Compound: Short afifavidin
    Species: Afifella pfennigii [TaxId:209897]
    Database cross-references and differences (RAF-indexed):
    • PDB 6HDT
    Domains in SCOPe 2.08: d6hdtd_
  • Heterogens: BTN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6hdtA (A:)
maqdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyp
lvgltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqq
gsdtftlvnkamk

    Sequence, based on observed residues (ATOM records): (download) 
    >6hdtA (A:)
qdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyplv
gltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqqgs
dtftlvn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6hdtB (B:)
maqdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyp
lvgltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqq
gsdtftlvnkamk

    Sequence, based on observed residues (ATOM records): (download) 
    >6hdtB (B:)
msprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyplvgl
twgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqqgsdt
ftlv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6hdtC (C:)
maqdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyp
lvgltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqq
gsdtftlvnkamk

    Sequence, based on observed residues (ATOM records): (download) 
    >6hdtC (C:)
msprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyplvgl
twgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqqgsdt
ftlvn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6hdtD (D:)
maqdmsprqsaeafgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyp
lvgltwgnfigftvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqq
gsdtftlvnkamk

    Sequence, based on observed residues (ATOM records): (download) 
    >6hdtD (D:)
afgvpavssswvnqdgstmtlvfgagnsvsgfyvnnapgfgcqgtpyplvgltwgnfigf
tvawdnatancnsvtswtgfaeaagsdvtivtdwnlayqgsssgeiqqgsdtftlv