PDB entry 6hd0

View 6hd0 on RCSB PDB site
Description: common mode of remodeling aaa atpases p97/cdc48 by their disassembly cofactors aspl/pux1
Deposited on 2018-08-17, released 2019-08-28
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 3.73 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Homo sapiens [TaxId:9606]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Homo sapiens [TaxId:9606]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Homo sapiens [TaxId:9606]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Plant UBX domain-containing protein 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PUX1, At3g27310, K17E12.13
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Plant UBX domain-containing protein 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PUX1, At3g27310, K17E12.13
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Plant UBX domain-containing protein 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PUX1, At3g27310, K17E12.13
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Plant UBX domain-containing protein 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PUX1, At3g27310, K17E12.13
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Plant UBX domain-containing protein 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PUX1, At3g27310, K17E12.13
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Plant UBX domain-containing protein 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PUX1, At3g27310, K17E12.13
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Homo sapiens [TaxId:9606]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Homo sapiens [TaxId:9606]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: Transitional endoplasmic reticulum ATPase
    Species: Homo sapiens [TaxId:9606]
    Gene: VCP
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ADP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6hd0A (A:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
g

    Sequence, based on observed residues (ATOM records):
    >6hd0A (A:)
pnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdeki
rmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyflea
yrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslnevg
yddiggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravanet
gaffflingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgever
rivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrleilq
ihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidaevm
nslavtmddfrwalsqsnps

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6hd0B (B:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
g

    Sequence, based on observed residues (ATOM records):
    >6hd0B (B:)
pnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdeki
rmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyflea
yrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslnevg
yddiggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravanet
gaffflingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgever
rivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrleilq
ihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidaevm
nslavtmddfrwalsqsnp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6hd0C (C:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
g

    Sequence, based on observed residues (ATOM records):
    >6hd0C (C:)
pnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdeki
rmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyflea
yrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslnevg
yddiggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravanet
gaffflingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgever
rivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrleilq
ihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledidaevmns
lavtmddfrwalsqsnp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6hd0D (D:)
mfvddpslhtlkrrrleitdsmeasssaqakiadmreklgrevrvfetssisqrpsqvss
addesddfyeftpadfyrllatkkedkslktrkireaeeaarrskltkavirvrfpdnht
leatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdfysagfvpgaivyf
sndqpkddggsstpylneeilslkdleamtkavepvesssepatvdssavpveherkste
kkttkpkwfkm

    Sequence, based on observed residues (ATOM records):
    >6hd0D (D:)
kavirvrfpdnhtleatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdf
ysagfvpgaivyfsn

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6hd0E (E:)
mfvddpslhtlkrrrleitdsmeasssaqakiadmreklgrevrvfetssisqrpsqvss
addesddfyeftpadfyrllatkkedkslktrkireaeeaarrskltkavirvrfpdnht
leatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdfysagfvpgaivyf
sndqpkddggsstpylneeilslkdleamtkavepvesssepatvdssavpveherkste
kkttkpkwfkm

    Sequence, based on observed residues (ATOM records):
    >6hd0E (E:)
kavirvrfpdnhtleatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdf
ysagfvpgaivyfsn

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6hd0F (F:)
mfvddpslhtlkrrrleitdsmeasssaqakiadmreklgrevrvfetssisqrpsqvss
addesddfyeftpadfyrllatkkedkslktrkireaeeaarrskltkavirvrfpdnht
leatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdfysagfvpgaivyf
sndqpkddggsstpylneeilslkdleamtkavepvesssepatvdssavpveherkste
kkttkpkwfkm

    Sequence, based on observed residues (ATOM records):
    >6hd0F (F:)
kavirvrfpdnhtleatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdf
ysagfvpgaivyfsn

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6hd0G (G:)
mfvddpslhtlkrrrleitdsmeasssaqakiadmreklgrevrvfetssisqrpsqvss
addesddfyeftpadfyrllatkkedkslktrkireaeeaarrskltkavirvrfpdnht
leatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdfysagfvpgaivyf
sndqpkddggsstpylneeilslkdleamtkavepvesssepatvdssavpveherkste
kkttkpkwfkm

    Sequence, based on observed residues (ATOM records):
    >6hd0G (G:)
kavirvrfpdnhtleatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdf
ysagfvpgaivyfsn

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6hd0I (I:)
mfvddpslhtlkrrrleitdsmeasssaqakiadmreklgrevrvfetssisqrpsqvss
addesddfyeftpadfyrllatkkedkslktrkireaeeaarrskltkavirvrfpdnht
leatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdfysagfvpgaivyf
sndqpkddggsstpylneeilslkdleamtkavepvesssepatvdssavpveherkste
kkttkpkwfkm

    Sequence, based on observed residues (ATOM records):
    >6hd0I (I:)
kavirvrfpdnhtleatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdf
ysagfvpgaivyfsn

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6hd0K (K:)
mfvddpslhtlkrrrleitdsmeasssaqakiadmreklgrevrvfetssisqrpsqvss
addesddfyeftpadfyrllatkkedkslktrkireaeeaarrskltkavirvrfpdnht
leatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdfysagfvpgaivyf
sndqpkddggsstpylneeilslkdleamtkavepvesssepatvdssavpveherkste
kkttkpkwfkm

    Sequence, based on observed residues (ATOM records):
    >6hd0K (K:)
kavirvrfpdnhtleatfhpsekiqglidlvkrvvahpdvpfylyttppkkqikdfsqdf
ysagfvpgaivyfsn

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6hd0T (T:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
g

    Sequence, based on observed residues (ATOM records):
    >6hd0T (T:)
pnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdeki
rmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyflea
yrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslnevg
yddiggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravanet
gaffflingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgever
rivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrleilq
ihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidaevm
nslavtmddfrwalsqsnps

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6hd0U (U:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
g

    Sequence, based on observed residues (ATOM records):
    >6hd0U (U:)
pnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdeki
rmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyflea
yrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslnevg
yddiggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravanet
gaffflingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgever
rivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrleilq
ihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidaevm
nslavtmddfrwalsqsnps

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6hd0V (V:)
masgadskgddlstailkqknrpnrlivdeainednsvvslsqpkmdelqlfrgdtvllk
gkkrreavcivlsddtcsdekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpid
dtvegitgnlfevylkpyfleayrpirkgdiflvrggmravefkvvetdpspycivapdt
vihcegepikredeeeslnevgyddiggcrkqlaqikemvelplrhpalfkaigvkpprg
illygppgtgktliaravanetgaffflingpeimsklagesesnlrkafeeaeknapai
ifideldaiapkrekthgeverrivsqlltlmdglkqrahvivmaatnrpnsidpalrrf
grfdrevdigipdatgrleilqihtknmkladdvdleqvanethghvgadlaalcseaal
qairkkmdlidledetidaevmnslavtmddfrwalsqsnpsalretvvevpqvtwedig
g

    Sequence, based on observed residues (ATOM records):
    >6hd0V (V:)
pnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdeki
rmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyflea
yrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeeeslnevg
yddiggcrkqlaqikemvelplrhpalfkaigvkpprgillygppgtgktliaravanet
gaffflingpeimsklagesesnlrkafeeaeknapaiifideldaiapkrekthgever
rivsqlltlmdglkqrahvivmaatnrpnsidpalrrfgrfdrevdigipdatgrleilq
ihtknmkladdvdleqvanethghvgadlaalcseaalqairkkmdlidledetidaevm
nslavtmddfrwalsqsnps