PDB entry 6hc3

View 6hc3 on RCSB PDB site
Description: tfam bound to site-x
Deposited on 2018-08-13, released 2019-06-05
The last revision was dated 2019-10-30, with a file datestamp of 2019-10-25.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcription factor A, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: TFAM, TCF6, TCF6L2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA/RNA (5'-d(*tp*ap*ap*cp*ap*ap*ap*ap*ap*ap*tp*tp*tp*cp*cp*ap*cp*cp*ap*ap*ap*c)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'C':
    Compound: DNA (5'-d(*tp*tp*tp*gp*gp*tp*gp*gp*ap*ap*ap*tp*tp*tp*tp*tp*tp*gp*tp*tp*ap*g)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'D':
    Compound: Transcription factor A, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: TFAM, TCF6, TCF6L2
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA/RNA (5'-d(*tp*ap*ap*cp*ap*ap*ap*ap*ap*ap*tp*tp*tp*cp*cp*ap*cp*cp*ap*ap*ap*c)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'F':
    Compound: DNA (5'-d(*tp*tp*tp*gp*gp*tp*gp*gp*ap*ap*ap*tp*tp*tp*tp*tp*tp*gp*tp*tp*ap*g)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'G':
    Compound: Transcription factor A, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: TFAM, TCF6, TCF6L2
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: DNA/RNA (5'-d(*tp*ap*ap*cp*ap*ap*ap*ap*ap*ap*tp*tp*tp*cp*cp*ap*cp*cp*ap*ap*ap*c)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'I':
    Compound: DNA (5'-d(*tp*tp*tp*gp*gp*tp*gp*gp*ap*ap*ap*tp*tp*tp*tp*tp*tp*gp*tp*tp*ap*g)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'J':
    Compound: Transcription factor A, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: TFAM, TCF6, TCF6L2
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: DNA/RNA (5'-d(*tp*ap*ap*cp*ap*ap*ap*ap*ap*ap*tp*tp*tp*cp*cp*ap*cp*cp*ap*ap*ap*c)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'L':
    Compound: DNA (5'-d(*tp*tp*tp*gp*gp*tp*gp*gp*ap*ap*ap*tp*tp*tp*tp*tp*tp*gp*tp*tp*ap*g)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Heterogens: TLA, 1PE, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6hc3A (A:)
mgssfvylprwfssvlascpkkpvssylrfskeqlpifkaqnpdakttelirriaqrwre
lpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkamtkkkelt
llgkpkrprsaynvyvaerfqeakgdspqeklktvkenwknlsdsekelyiqhakedetr
yhnemksweeqmievgrkdllrrtikkqrkygaeeclqhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hc3A (A:)
ssvlascpkkpvssylrfskeqlpifkaqnpdakttelirriaqrwrelpdskkkiyqda
yraewqvykeeisrfkeqltpsqimslekeimdkhlkrkamtkkkeltllgkpkrprsay
nvyvaerfqeakgdspqeklktvkenwknlsdsekelyiqhakedetryhnemksweeqm
ievgrkdllrrt

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6hc3D (D:)
mgssfvylprwfssvlascpkkpvssylrfskeqlpifkaqnpdakttelirriaqrwre
lpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkamtkkkelt
llgkpkrprsaynvyvaerfqeakgdspqeklktvkenwknlsdsekelyiqhakedetr
yhnemksweeqmievgrkdllrrtikkqrkygaeeclqhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hc3D (D:)
ssvlascpkkpvssylrfskeqlpifkaqnpdakttelirriaqrwrelpdskkkiyqda
yraewqvykeeisrfkeqltpsqimslekeimdkhlkrkamtkkkeltllgkpkrprsay
nvyvaerfqeakgdspqeklktvkenwknlsdsekelyiqhakedetryhnemksweeqm
ievgrkdllrrt

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6hc3G (G:)
mgssfvylprwfssvlascpkkpvssylrfskeqlpifkaqnpdakttelirriaqrwre
lpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkamtkkkelt
llgkpkrprsaynvyvaerfqeakgdspqeklktvkenwknlsdsekelyiqhakedetr
yhnemksweeqmievgrkdllrrtikkqrkygaeeclqhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hc3G (G:)
ssvlascpkkpvssylrfskeqlpifkaqnpdakttelirriaqrwrelpdskkkiyqda
yraewqvykeeisrfkeqltpsqimslekeimdkhlkrkamtkkkeltllgkpkrprsay
nvyvaerfqeakgdspqeklktvkenwknlsdsekelyiqhakedetryhnemksweeqm
ievgrkdllrrt

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6hc3J (J:)
mgssfvylprwfssvlascpkkpvssylrfskeqlpifkaqnpdakttelirriaqrwre
lpdskkkiyqdayraewqvykeeisrfkeqltpsqimslekeimdkhlkrkamtkkkelt
llgkpkrprsaynvyvaerfqeakgdspqeklktvkenwknlsdsekelyiqhakedetr
yhnemksweeqmievgrkdllrrtikkqrkygaeeclqhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6hc3J (J:)
svlascpkkpvssylrfskeqlpifkaqnpdakttelirriaqrwrelpdskkkiyqday
raewqvykeeisrfkeqltpsqimslekeimdkhlkrkamtkkkeltllgkpkrprsayn
vyvaerfqeakgdspqeklktvkenwknlsdsekelyiqhakedetryhnemksweeqmi
evgrkdllrrt

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.