PDB entry 6h9y

View 6h9y on RCSB PDB site
Description: Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens
Class: viral protein
Keywords: histo-blood group antigen rotavirus, VIRAL PROTEIN
Deposited on 2018-08-06, released 2019-06-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.31 Å
R-factor: N/A
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer capsid protein VP4
    Species: Human rotavirus A [TaxId:10941]
    Gene: VP4
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2K9UWM4 (3-161)
      • expression tag (0-2)
      • conflict (98)
    Domains in SCOPe 2.08: d6h9ya1, d6h9ya2
  • Chain 'B':
    Compound: Outer capsid protein VP4
    Species: Human rotavirus A [TaxId:10941]
    Gene: VP4
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2K9UWM4 (3-161)
      • expression tag (2)
      • conflict (98)
    Domains in SCOPe 2.08: d6h9yb1, d6h9yb2
  • Heterogens: BTB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6h9yA (A:)
gsmldgpyqpttftppsdywilinsntngvvyestnnsdfwtaviavephvdpvdrqynv
fgenkqfnvrndsdkwkflemfrgssqndfynrrtltsntrlvgilkyggriwtfhgetp
rattdssntanlngisitihsefyiiprsqeskcneyinngl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6h9yB (B:)
gsmldgpyqpttftppsdywilinsntngvvyestnnsdfwtaviavephvdpvdrqynv
fgenkqfnvrndsdkwkflemfrgssqndfynrrtltsntrlvgilkyggriwtfhgetp
rattdssntanlngisitihsefyiiprsqeskcneyinngl

    Sequence, based on observed residues (ATOM records): (download) 
    >6h9yB (B:)
mldgpyqpttftppsdywilinsntngvvyestnnsdfwtaviavephvdpvdrqynvfg
enkqfnvrndsdkwkflemfrgssqndfynrrtltsntrlvgilkyggriwtfhgetpra
ttdssntanlngisitihsefyiiprsqeskcneyinngl