PDB entry 6h9v

View 6h9v on RCSB PDB site
Description: Crystal structure of deaminated P domain from norovirus strain Saga GII-4 in complex with Fuc
Class: viral protein
Keywords: viral capsid protein, protruding domain, viral protein, isoaspartate, isopeptide, fucose, glycan, receptor
Deposited on 2018-08-06, released 2019-04-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.52 Å
R-factor: N/A
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Norovirus Hu/GII-4/Saga4/2006/JP [TaxId:546981]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B5BTR7 (3-308)
      • expression tag (0-2)
      • conflict (151)
    Domains in SCOPe 2.08: d6h9va1, d6h9va2
  • Chain 'B':
    Compound: vp1
    Species: Norovirus Hu/GII-4/Saga4/2006/JP [TaxId:546981]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B5BTR7 (3-308)
      • expression tag (2)
    Domains in SCOPe 2.08: d6h9vb1, d6h9vb2
  • Heterogens: MFU, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6h9vA (A:)
tgskpftvpiltveemtnsrfpipleklftgpsgafvvqpqngrcttdgvllgttqlspv
nictfrgdvthiagsrnytmnlaslnwnnydpteeipaplgtpdfvgkiqglltqttkgd
gstrghkatvytgsapftpklgsvqfstdteddfethqntkftpvgviqdgstthrnepq
qwvlpsysgrnvhnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqhf
yqeaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswv
nqfytlapm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6h9vB (B:)
tgskpftvpiltveemtnsrfpipleklftgpsgafvvqpqngrcttdgvllgttqlspv
nictfrgdvthiagsrnytmnlaslnwnnydpteeipaplgtpdfvgkiqglltqttkgd
gstrghkatvytgsapftpklgsvqfstdteddfethqntkftpvgviqdgstthrnepq
qwvlpsysgrnvhnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqhf
yqeaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswv
nqfytlapm

    Sequence, based on observed residues (ATOM records): (download) 
    >6h9vB (B:)
skpftvpiltveemtnsrfpipleklftgpsgafvvqpqngrcttdgvllgttqlspvni
ctfrgdvthiagsrnytmnlaslnwnnydpteeipaplgtpdfvgkiqglltqttkgdgs
trghkatvytgsapftpklgsvqfstdtdfethqntkftpvgviqdtthrnepqqwvlps
ysgrnvhnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqhfyqeaap
aqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswvnqfytl
apm