PDB entry 6h8q

View 6h8q on RCSB PDB site
Description: structural basis for scc3-dependent cohesin recruitment to chromatin
Deposited on 2018-08-03, released 2018-08-29
The last revision was dated 2018-08-29, with a file datestamp of 2018-08-24.
Experiment type: XRAY
Resolution: 3.63 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cohesin subunit scc3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: IRR1, SCC3, YIL026C
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: cohesin subunit scc3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: IRR1, SCC3, YIL026C
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA (5'-d(p*tp*tp*tp*tp*tp*cp*ap*ap*gp*gp*ap*ap*ap*cp*gp*ap*ap*ap*g)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'D':
    Compound: DNA (5'-d(p*cp*tp*tp*tp*cp*gp*tp*tp*tp*cp*cp*tp*tp*gp*ap*ap*ap*ap*a)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'E':
    Compound: DNA (5'-d(p*cp*tp*tp*tp*cp*gp*tp*tp*tp*cp*cp*tp*tp*gp*ap*ap*ap*ap*a)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'F':
    Compound: DNA (5'-d(p*cp*tp*tp*tp*cp*gp*tp*tp*tp*cp*cp*tp*tp*gp*ap*ap*ap*ap*a)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'G':
    Compound: sister chromatid cohesion protein 1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: MCD1, PDS3, RHC21, SCC1, YDL003W, YD8119.04
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: sister chromatid cohesion protein 1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: MCD1, PDS3, RHC21, SCC1, YDL003W, YD8119.04
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6h8qA (A:)
mtavrrstrirtksqvieedyddeqntsaqhvesdkitaktqheeeeeqdtgeseessse
ddyedqddddyvdtatakrksrkrkpksasntsskrqkkkptsaqksavshapayhrskk
dqdqyleiakdfqptelfdilstsedvsieellrewletysenrdkflqefinlllnccg
svarvedhdvhsnessnetigeiqllfqrqklhefylliskenkkrknfkmgplyqnfae
fmtkllevandlqllyvesdeddtqivtgnlvldlltwlssfsvckircfryistltlyl
fqdyltqqavnleknylaklskqlsleekkkrpnnktleklestiaetqgskvvidsiid
nivklcfvhrykdvsdlirsesmlhlsiwiknypeyflkvtflkyfgwllsdnsvsvrlq
vtkilphliiqnhnskstdnsairqvferfktkilevairdvnldvrihsiqvlteassl
gylddseiliisslmfdeefdpfktssfnkrskflstvakflarvikekfdefikthedl
pkevdglevgpvvqvgifikilndsliyhlkdcaevdsrtkirmltqaaeflspyisthl
kticnllisdtesneliqklqnsannnsddedvddeelditplfpidrnstilylnvfhg
lcagannpkiqtkdsvkeivlplfydllnaasiesadilcpllesfitfslddwisigye
telkkitdktikafmdstignskvdmkydifakfihhihhfekkelqekflnqiatlkih
lkkflqekmdpnnsrddykdltcslyelyinkltilgrdypievdeellqlflnnfvsri
pimfqdfddstaqeinfkmlvllatwnlekwreiiekvrdyensiskdlrsvwkpiaaii
grlntlvislaatnetfeninslfylkwsactslmdiivaikifelklpadattwrysms
eqfpfylhdnaskvllkiflyleslfakqvdvqlervadedanlndlpetgffenietef
llftvklkglmklnilderfasrvalnkeklgplfkkivddtimenpepnkkniqkaksn
qtqrekaplqpnseretdhantenndpdipmtidlepieessqnnselapieehptvvda
idnsdeitqd

    Sequence, based on observed residues (ATOM records):
    >6h8qA (A:)
telfdilstsedvsieellrewletysenrdkflqefinlllnccgsvarvedhdvhsne
ssnetigeiqllfqrqklhefylliskenkkrknfkmgplyqnfaefmtkllevandlql
lyvgnlvldlltwlssfsvckircfryistltlylfqdyltqqavnleknylaklskqls
leekkkrpnnktleklestiaetqgskvvidsiidnivklcfvhrykdvsdlirsesmlh
lsiwiknypeyflkvtflkyfgwllsdnsvsvrlqvtkilphliiqnsairqvferfktk
ilevairdvnldvrihsiqvlteasslgylddseiliisslmfdeefdpfktssfnkrsk
flstvakflarvikekfdefikthedlpkevdglevgpvvqvgifikilndsliyhlkdc
aevdsrtkirmltqaaeflspyisthlkticnllisdtesnelipidrnstilylnvfhg
lcagannpkiqtkdsvkeivlplfydllnaasiesadilcpllesfitfslddwisigye
telkkitdktikafmdstignskvdmkydifakfihhihhfekkelqekflnqiatlkih
lkkflqekmdpnnsrddykdltcslyelyinkltilgrdypievdeellqlflnnfvsri
pimfqdfddstaqeinfkmlvllatwnlekwreiiekvrdyeiskdlrsvwkpiaaiigr
lntlvislaatnetfeninslfylkwsactslmdiivaikifelklpadattwrysmseq
fpfylhdnaskvllkiflyleslfakqvdvqlervadedanlndlpetgffenietefll
ftvklkglmklnilderfasrvalnkeklgplfkkivdd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6h8qB (B:)
mtavrrstrirtksqvieedyddeqntsaqhvesdkitaktqheeeeeqdtgeseessse
ddyedqddddyvdtatakrksrkrkpksasntsskrqkkkptsaqksavshapayhrskk
dqdqyleiakdfqptelfdilstsedvsieellrewletysenrdkflqefinlllnccg
svarvedhdvhsnessnetigeiqllfqrqklhefylliskenkkrknfkmgplyqnfae
fmtkllevandlqllyvesdeddtqivtgnlvldlltwlssfsvckircfryistltlyl
fqdyltqqavnleknylaklskqlsleekkkrpnnktleklestiaetqgskvvidsiid
nivklcfvhrykdvsdlirsesmlhlsiwiknypeyflkvtflkyfgwllsdnsvsvrlq
vtkilphliiqnhnskstdnsairqvferfktkilevairdvnldvrihsiqvlteassl
gylddseiliisslmfdeefdpfktssfnkrskflstvakflarvikekfdefikthedl
pkevdglevgpvvqvgifikilndsliyhlkdcaevdsrtkirmltqaaeflspyisthl
kticnllisdtesneliqklqnsannnsddedvddeelditplfpidrnstilylnvfhg
lcagannpkiqtkdsvkeivlplfydllnaasiesadilcpllesfitfslddwisigye
telkkitdktikafmdstignskvdmkydifakfihhihhfekkelqekflnqiatlkih
lkkflqekmdpnnsrddykdltcslyelyinkltilgrdypievdeellqlflnnfvsri
pimfqdfddstaqeinfkmlvllatwnlekwreiiekvrdyensiskdlrsvwkpiaaii
grlntlvislaatnetfeninslfylkwsactslmdiivaikifelklpadattwrysms
eqfpfylhdnaskvllkiflyleslfakqvdvqlervadedanlndlpetgffenietef
llftvklkglmklnilderfasrvalnkeklgplfkkivddtimenpepnkkniqkaksn
qtqrekaplqpnseretdhantenndpdipmtidlepieessqnnselapieehptvvda
idnsdeitqd

    Sequence, based on observed residues (ATOM records):
    >6h8qB (B:)
telfdilstsedvsieellrewletysenrdkflqefinlllnccgsvarvedhdvhsne
ssnetigeiqllfqrqklhefylliskenkkrknfkmgplyqnfaefmtkllevandlql
lyvgnlvldlltwlssfsvckircfryistltlylfqdyltqqavnleknylaklskqls
leekkkrpnnktleklestiaetqgskvvidsiidnivklcfvhrykdvsdlirsesmlh
lsiwiknypeyflkvtflkyfgwllsdnsvsvrlqvtkilphliiqnsairqvferfktk
ilevairdvnldvrihsiqvlteasslgylddseiliisslmfdeefdpfktssfnkrsk
flstvakflarvikekfdefikthedlpkevdglevgpvvqvgifikilndsliyhlkdc
aevdsrtkirmltqaaeflspyisthlkticnllisdtesnelipidrnstilylnvfhg
lcagannpkiqtkdsvkeivlplfydllnaasiesadilcpllesfitfslddwisigye
telkkitdktikafmdstignskvdmkydifakfihhihhfekkelqekflnqiatlkih
lkkflqekmdpnnsrddykdltcslyelyinkltilgrdypievdeellqlflnnfvsri
pimfqdfddstaqeinfkmlvllatwnlekwreiiekvrkdlrsvwkpiaaiigrlntlv
islaatnetfeninslfylkwsactslmdiivaikifelklpadattwrysmseqfpfyl
hdnaskvllkiflyleslfakqvdvqlervadedanlndlpetgffenietefllftvkl
kglmklnilderfasrvalnkeklgplfkkivd

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6h8qG (G:)
tdamtesqpkqtgtrrnskllntksiqideetensesiassntykeersnnlltpqptnf
ttkrlwseitesmsylpdpilknflsyeslkkrkihngre

    Sequence, based on observed residues (ATOM records):
    >6h8qG (G:)
ptnfttkrlwseitesmsylpdpilknfls

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6h8qH (H:)
tdamtesqpkqtgtrrnskllntksiqideetensesiassntykeersnnlltpqptnf
ttkrlwseitesmsylpdpilknflsyeslkkrkihngre

    Sequence, based on observed residues (ATOM records):
    >6h8qH (H:)
fttkrlwseitesmsylpdpilknfls