PDB entry 6h82

View 6h82 on RCSB PDB site
Description: cryo-em structure of the archaeal extremophilic internal membrane containing haloarcula hispanica icosahedral virus 2 (hhiv-2) at 3.78 angstroms resolution.
Deposited on 2018-08-01, released 2019-04-03
The last revision was dated 2020-06-17, with a file datestamp of 2020-06-12.
Experiment type: EM
Resolution: 3.78 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: vp4
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: vp7
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: Uncharacterized protein
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: gps III
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H82 (0-104)
  • Chain 'd':
    Compound: gps III
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H82 (0-104)
  • Chain 'g':
    Compound: VP16 (vertex complex)
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H82 (0-216)
  • Chain 'm':
    Compound: polypeptide stretch (vertex complex)
    Species: Haloarcula hispanica icosahedral virus 2 [TaxId:1154689]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H82 (0-24)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6h82A (A:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6h82B (B:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6h82C (C:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6h82D (D:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeska

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6h82E (E:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeskavrq

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6h82F (F:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeskavrq

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6h82G (G:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6h82H (H:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6h82I (I:)
ignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrdan
gdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmidere
ivkifvevppnangmdadnsritigddtsdygkavgivehg

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6h82J (J:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeska

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6h82K (K:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeskavrq

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6h82L (L:)
ignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrdan
gdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmidere
ivkifvevppnangmdadnsritigddtsdygkavgivehg

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6h82M (M:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeskavrq

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6h82N (N:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeskavrq

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >6h82O (O:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6h82P (P:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6h82Q (Q:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >6h82R (R:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeskavrq

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records:
    >6h82S (S:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeskavrq

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records:
    >6h82T (T:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeska

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records:
    >6h82U (U:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records:
    >6h82V (V:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records:
    >6h82W (W:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeska

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >6h82X (X:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records:
    >6h82Y (Y:)
ignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrdan
gdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmidere
ivkifvevppnangmdadnsritigddtsdygkavgivehg

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records:
    >6h82Z (Z:)
qtqeytinhtggvlgdsyvttasnqtspqretavlsfecprkfeeinyvgqrdatrfvpr
ttesitgsanddtvvdltaniqpvageeviaeqdypvavaynvtqgvevdvvdadyaadt
vtlgtnpadgdevkvwpimsdgdvqfrlinqfgqeegrvypwstplyrwhdfpqlkrgre
inlhgsaswsenetleilldapqaltwedsdyprgqyvttleqdveitl

  • Chain 'a':
    Sequence; same for both SEQRES and ATOM records:
    >6h82a (a:)
peignngaekqislhkgqpfidtqdvgaadpntpavtiegpsdyviaidagtpvapefrd
angdkldpstrvtiqkcdkqgnplgdgivfsdtlgrfeyskmrsdpdymrktttslmide
reivkifvevppnangmdadnsritigddtsdygkavgivehgdlspaeskavrq

  • Chain 'b':
    Sequence; same for both SEQRES and ATOM records:
    >6h82b (b:)
qtadgrvglvpvnsyvtletddldtdehpvtdagtvalepgesapivrydlgqpaavyav
gatdeanveyelkvnnsktvggrtnsplgvlntpfsfveklggaipcetaatywahyssd
atgtvelagrmhiev

  • Chain 'c':
    Sequence; same for both SEQRES and ATOM records:
    >6h82c (c:)
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  • Chain 'd':
    Sequence; same for both SEQRES and ATOM records:
    >6h82d (d:)
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  • Chain 'g':
    Sequence; same for both SEQRES and ATOM records:
    >6h82g (g:)
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  • Chain 'm':
    Sequence; same for both SEQRES and ATOM records:
    >6h82m (m:)
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