PDB entry 6h72

View 6h72 on RCSB PDB site
Description: GI.1 human norovirus protruding domain in complex with Nano-94 and 2-fucosyllactose (2FL)
Class: viral protein
Keywords: Norovirus, GI.1, P domain, Nano-94, 2-fucosyllactose, VIRAL PROTEIN
Deposited on 2018-07-30, released 2018-12-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Norwalk virus (strain GI/Human/United States/Norwalk/1968) [TaxId:524364]
    Gene: ORF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83884 (Start-291)
      • conflict (26)
  • Chain 'B':
    Compound: Capsid protein VP1
    Species: Norwalk virus (strain GI/Human/United States/Norwalk/1968) [TaxId:524364]
    Gene: ORF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83884 (Start-291)
      • conflict (26)
  • Chain 'C':
    Compound: Nanobody (VHH) Nano-94
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H72 (0-End)
    Domains in SCOPe 2.08: d6h72c1, d6h72c2
  • Chain 'D':
    Compound: Nanobody (VHH) Nano-94
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H72 (0-End)
    Domains in SCOPe 2.08: d6h72d1, d6h72d2
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6h72C (C:)
qvqlqesggglvqaggslrlscaasgrmfsinsmgwyrqapgkerelvatiseagtttya
dsvrgrftiardnakntvylqmnslnpedtavyycnayiqldstiwfraywgqgtqvtvs
sgrypydvpdygsgra

    Sequence, based on observed residues (ATOM records): (download) 
    >6h72C (C:)
qvqlqesggglvqaggslrlscaasgrmfsinsmgwyrqapgkerelvatiseagtttya
dsvrgrftiardnakntvylqmnslnpedtavyycnayiqldstiwfraywgqgtqvtvs
s

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6h72D (D:)
qvqlqesggglvqaggslrlscaasgrmfsinsmgwyrqapgkerelvatiseagtttya
dsvrgrftiardnakntvylqmnslnpedtavyycnayiqldstiwfraywgqgtqvtvs
sgrypydvpdygsgra

    Sequence, based on observed residues (ATOM records): (download) 
    >6h72D (D:)
qvqlqesggglvqaggslrlscaasgrmfsinsmgwyrqapgkerelvatiseagtttya
dsvrgrftiardnakntvylqmnslnpedtavyycnayiqldstiwfraywgqgtqvtvs