PDB entry 6h6y

View 6h6y on RCSB PDB site
Description: GI.1 human norovirus protruding domain in complex with Nano-7
Class: viral protein
Keywords: Norovirus, GI.1, P domain, Nano-7, VIRAL PROTEIN
Deposited on 2018-07-30, released 2018-12-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-03-13, with a file datestamp of 2019-03-08.
Experiment type: XRAY
Resolution: 1.58 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Norwalk virus (strain GI/Human/United States/Norwalk/1968) [TaxId:524364]
    Gene: ORF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83884
      • conflict (26)
  • Chain 'B':
    Compound: Capsid protein VP1
    Species: Norwalk virus (strain GI/Human/United States/Norwalk/1968) [TaxId:524364]
    Gene: ORF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83884 (0-End)
      • conflict (26)
  • Chain 'C':
    Compound: Capsid protein VP1
    Species: Norwalk virus (strain GI/Human/United States/Norwalk/1968) [TaxId:524364]
    Gene: ORF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83884
      • conflict (26)
  • Chain 'D':
    Compound: Capsid protein VP1
    Species: Norwalk virus (strain GI/Human/United States/Norwalk/1968) [TaxId:524364]
    Gene: ORF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83884
      • conflict (26)
  • Chain 'E':
    Compound: Nanobody (VHH) Nano-7
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H6Y (0-End)
    Domains in SCOPe 2.08: d6h6ye1, d6h6ye2
  • Chain 'F':
    Compound: Nanobody (VHH) Nano-7
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H6Y (0-End)
    Domains in SCOPe 2.08: d6h6yf1, d6h6yf2
  • Chain 'G':
    Compound: Nanobody (VHH) Nano-7
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H6Y (0-End)
    Domains in SCOPe 2.08: d6h6yg1, d6h6yg2
  • Chain 'H':
    Compound: Nanobody (VHH) Nano-7
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H6Y (0-End)
    Domains in SCOPe 2.08: d6h6yh1, d6h6yh2
  • Heterogens: NA, EDO, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6h6yE (E:)
qvqlqesggglvqaggslrlscavsgrtfsnyysgwfrqapgkereflasirwsdsttny
adsvkgrftisrdtakntvylqmnslkledtavyhcaarrlatydywgqgtqvtvssgry
pydvpdygsgra

    Sequence, based on observed residues (ATOM records): (download) 
    >6h6yE (E:)
qvqlqesggglvqaggslrlscavsgrtfsnyysgwfrqapkereflasirwsdsttnya
dsvkgrftisrdtakntvylqmnslkledtavyhcaarrlatydywgqgtqvtvssg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6h6yF (F:)
qvqlqesggglvqaggslrlscavsgrtfsnyysgwfrqapgkereflasirwsdsttny
adsvkgrftisrdtakntvylqmnslkledtavyhcaarrlatydywgqgtqvtvssgry
pydvpdygsgra

    Sequence, based on observed residues (ATOM records): (download) 
    >6h6yF (F:)
qvqlqesggglvqaggslrlscavsgrtfsnyysgwfrqakereflasirwsdsttnyad
svkgrftisrdtakntvylqmnslkledtavyhcaarrlatydywgqgtqvtvss

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6h6yG (G:)
qvqlqesggglvqaggslrlscavsgrtfsnyysgwfrqapgkereflasirwsdsttny
adsvkgrftisrdtakntvylqmnslkledtavyhcaarrlatydywgqgtqvtvssgry
pydvpdygsgra

    Sequence, based on observed residues (ATOM records): (download) 
    >6h6yG (G:)
qvqlqesggglvqaggslrlscavsgrtfsnyysgwfrqapkereflasirwsdsttnya
dsvkgrftisrdtakntvylqmnslkledtavyhcaarrlatydywgqgtqvtvs

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6h6yH (H:)
qvqlqesggglvqaggslrlscavsgrtfsnyysgwfrqapgkereflasirwsdsttny
adsvkgrftisrdtakntvylqmnslkledtavyhcaarrlatydywgqgtqvtvssgry
pydvpdygsgra

    Sequence, based on observed residues (ATOM records): (download) 
    >6h6yH (H:)
qvqlqesggglvqaggslrlscavsgrtfsnyysgwfrqapgkereflasirwsdsttny
adsvkgrftisrdtakntvylqmnslkledtavyhcaarrlatydywgqgtqvtvssg