PDB entry 6h6v

View 6h6v on RCSB PDB site
Description: structure of the ubid-class enzyme hmff from pelotomaculum thermopropionicum in complex with fmn
Deposited on 2018-07-30, released 2019-02-27
The last revision was dated 2019-05-15, with a file datestamp of 2019-05-10.
Experiment type: XRAY
Resolution: 2.66 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
    Species: Pelotomaculum thermopropionicum SI [TaxId:370438]
    Gene: UbiD, PTH_0496
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
    Species: Pelotomaculum thermopropionicum SI [TaxId:370438]
    Gene: UbiD, PTH_0496
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
    Species: Pelotomaculum thermopropionicum SI [TaxId:370438]
    Gene: UbiD, PTH_0496
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
    Species: Pelotomaculum thermopropionicum SI [TaxId:370438]
    Gene: UbiD, PTH_0496
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
    Species: Pelotomaculum thermopropionicum SI [TaxId:370438]
    Gene: UbiD, PTH_0496
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
    Species: Pelotomaculum thermopropionicum SI [TaxId:370438]
    Gene: UbiD, PTH_0496
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FMN, K, MN, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6h6vA (A:)
mshslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtgl
agdrelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpip
thhagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaera
grpleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaei
viegkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllg
giareavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssev
khvvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidat
iplnlpgerferisipgldkikladyle

    Sequence, based on observed residues (ATOM records):
    >6h6vA (A:)
hslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtglag
drelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpipth
hagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaeragr
pleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaeivi
egkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllggi
areavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssevkh
vvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidatip
lnlpgerferisipgldkikladyl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6h6vB (B:)
mshslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtgl
agdrelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpip
thhagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaera
grpleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaei
viegkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllg
giareavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssev
khvvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidat
iplnlpgerferisipgldkikladyle

    Sequence, based on observed residues (ATOM records):
    >6h6vB (B:)
hslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtglag
drelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpipth
hagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaeragr
pleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaeivi
egkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllggi
areavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssevkh
vvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidatip
lnlpgerferisipgldkikladyl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6h6vC (C:)
mshslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtgl
agdrelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpip
thhagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaera
grpleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaei
viegkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllg
giareavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssev
khvvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidat
iplnlpgerferisipgldkikladyle

    Sequence, based on observed residues (ATOM records):
    >6h6vC (C:)
hslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtglag
drelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpipth
hagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaeragr
pleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaeivi
egkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllggi
areavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssevkh
vvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidatip
lnlpgerferisipgldkikladyl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6h6vD (D:)
mshslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtgl
agdrelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpip
thhagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaera
grpleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaei
viegkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllg
giareavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssev
khvvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidat
iplnlpgerferisipgldkikladyle

    Sequence, based on observed residues (ATOM records):
    >6h6vD (D:)
hslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtglag
drelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpipth
hagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaeragr
pleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaeivi
egkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllggi
areavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssevkh
vvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidatip
lnlpgerferisipgldkiklady

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6h6vE (E:)
mshslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtgl
agdrelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpip
thhagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaera
grpleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaei
viegkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllg
giareavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssev
khvvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidat
iplnlpgerferisipgldkikladyle

    Sequence, based on observed residues (ATOM records):
    >6h6vE (E:)
hslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtglag
drelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpipth
hagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaeragr
pleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaeivi
egkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllggi
areavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssevkh
vvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidatip
lnlpgerferisipgldkikladyl

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6h6vF (F:)
mshslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtgl
agdrelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpip
thhagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaera
grpleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaei
viegkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllg
giareavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssev
khvvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidat
iplnlpgerferisipgldkikladyle

    Sequence, based on observed residues (ATOM records):
    >6h6vF (F:)
hslrewlaflegkgklkrvrkevdpvfeiaalgkqadgicsllfervkgyavpvvtglag
drelfaaamsvpvegmleklaaavenpvpcrlvspdgapvkeciirenidllkmlpipth
hagdagpyitaailiardpdsgvrnvsihrlqvtgpdrlgililprhlwhffgkaeragr
pleialaigvhpavllasqattrlgvdeleiasallpqplelvkcetvdvevpagaeivi
egkilpgvrevegpfgeypryygpaaprpvvevtavthrrqpvyhtiipasrehlllggi
areavllqtvrqavptvknvhltpggscryhavisiekkhegeaknaifaaftsssevkh
vvvvdheinifdpeevewavatrcqagrdvfivkdamgnrldpssrdgvsdkmgidatip
lnlpgerferisipgldkikladyle