PDB entry 6h6l

View 6h6l on RCSB PDB site
Description: Murine norovirus protruding domain (CW3 strain) in complex with the CD300lf receptor and glycochenodeoxycholate (GCDCA)
Class: viral protein
Keywords: MNV1, sCD300lf, GCDCA, bile acid, glycochenodeoxycholate, viral protein
Deposited on 2018-07-27, released 2019-08-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-08-14, with a file datestamp of 2019-08-09.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6h6la_
  • Chain 'B':
    Compound: capsid protein
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6h6lb_
  • Chain 'C':
    Compound: capsid protein
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6h6lc_
  • Chain 'D':
    Compound: capsid protein
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6h6ld_
  • Chain 'E':
    Compound: CMRF35-like molecule 1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd300lf, Clm1, Lmir3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6h6le_
  • Chain 'F':
    Compound: CMRF35-like molecule 1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd300lf, Clm1, Lmir3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6h6lf_
  • Chain 'G':
    Compound: CMRF35-like molecule 1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd300lf, Clm1, Lmir3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6h6lg_
  • Chain 'H':
    Compound: CMRF35-like molecule 1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd300lf, Clm1, Lmir3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6h6lh_
  • Heterogens: MG, CHO, NA, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6h6lA (A:)
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyql
asv

    Sequence, based on observed residues (ATOM records): (download) 
    >6h6lA (A:)
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsyspltfptdgifevvswvprlyqlasv

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6h6lB (B:)
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyql
asv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6h6lC (C:)
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyql
asv

    Sequence, based on observed residues (ATOM records): (download) 
    >6h6lC (C:)
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsygpltfptdgifevvswvprlyqlasv

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6h6lD (D:)
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyql
asv

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6h6lE (E:)
edpvtgpeevsgqeqgsltvqcrytsgwkdykkywcqgvpqrscktlvetdaseqlvkkn
rvsirdnqrdfiftvtmedlrmsdagiywcgitkggldpmfkvtvnigpvpt

    Sequence, based on observed residues (ATOM records): (download) 
    >6h6lE (E:)
dpvtgpeevsgqeqgsltvqcrytsgwkdykkywcqgvpqrscktlvetdaseqlvkknr
vsirdnqrdfiftvtmedlrmsdagiywcgitkggldpmfkvtvnigpv

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6h6lF (F:)
edpvtgpeevsgqeqgsltvqcrytsgwkdykkywcqgvpqrscktlvetdaseqlvkkn
rvsirdnqrdfiftvtmedlrmsdagiywcgitkggldpmfkvtvnigpvpt

    Sequence, based on observed residues (ATOM records): (download) 
    >6h6lF (F:)
dpvtgpeevsgqeqgsltvqcrytsgwkdykkywcqgvpqrscktlvetdaseqlvkknr
vsirdnqrdfiftvtmedlrmsdagiywcgitkggldpmfkvtvnigpvpt

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6h6lG (G:)
edpvtgpeevsgqeqgsltvqcrytsgwkdykkywcqgvpqrscktlvetdaseqlvkkn
rvsirdnqrdfiftvtmedlrmsdagiywcgitkggldpmfkvtvnigpvpt

    Sequence, based on observed residues (ATOM records): (download) 
    >6h6lG (G:)
dpvtgpeevsltvqcrytykkywcqgvpqrscktlvetdaseqlvkknrvsirdftvtme
dlrmsdagiywcgitkggldpmfkvtvn

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6h6lH (H:)
edpvtgpeevsgqeqgsltvqcrytsgwkdykkywcqgvpqrscktlvetdaseqlvkkn
rvsirdnqrdfiftvtmedlrmsdagiywcgitkggldpmfkvtvnigpvpt

    Sequence, based on observed residues (ATOM records): (download) 
    >6h6lH (H:)
dpvtgpeevsgqeqgsltvqcrytsgwkdykkywcqgvpqrscktlvetdaseqlvkknr
vsirdnqrdfiftvtmedlrmsdagiywcgitkggldpmfkvtvnigpvp