PDB entry 6h6d

View 6h6d on RCSB PDB site
Description: crystal structures of the murine class i major histocompatibility complex h-2db in complex with adenovirus-derived peptide ad10
Deposited on 2018-07-27, released 2019-08-14
The last revision was dated 2019-08-14, with a file datestamp of 2019-08-09.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (0-98)
      • variant (84)
  • Chain 'C':
    Compound: Early E1A protein
    Species: unidentified adenovirus, synthetic [TaxId:10535]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (0-98)
      • variant (84)
  • Chain 'F':
    Compound: Early E1A protein
    Species: unidentified adenovirus, synthetic [TaxId:10535]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, GOL, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6h6dA (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwepppstdsymvivavlgvlgamaiig
avvafvmkrrrntggkggdyalapgsqssemslrdcka

    Sequence, based on observed residues (ATOM records):
    >6h6dA (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylknglrtds
pkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqkw
asvvvplgkeqnytcrvyheglpepltlrwep

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6h6dB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6h6dC (C:)
sgpsntppei

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6h6dD (D:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwepppstdsymvivavlgvlgamaiig
avvafvmkrrrntggkggdyalapgsqssemslrdcka

    Sequence, based on observed residues (ATOM records):
    >6h6dD (D:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnlrtd
spkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtfqk
wasvvvplgkeqnytcrvyheglpepltlrwep

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6h6dE (E:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6h6dF (F:)
sgpsntppei