PDB entry 6h3n

View 6h3n on RCSB PDB site
Description: structure of vgrg1 in the type vi secretion vgrg1-tse6-ef-tu complex embedded in lipid nanodiscs
Deposited on 2018-07-19, released 2018-09-12
The last revision was dated 2018-10-03, with a file datestamp of 2018-09-28.
Experiment type: EM
Resolution: 3.25 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VgrG1
    Species: Pseudomonas aeruginosa PAO1 [TaxId:208964]
    Gene: vgrG1, PA0091
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: VgrG1
    Species: Pseudomonas aeruginosa PAO1 [TaxId:208964]
    Gene: vgrG1, PA0091
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: VgrG1
    Species: Pseudomonas aeruginosa PAO1 [TaxId:208964]
    Gene: vgrG1, PA0091
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6h3nA (A:)
mqltrlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslsl
elpggsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikq
vfrnlgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvls
daygahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlev
rsniarphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghl
frlsgyprddqnreylvvgaeyrvvqelyetgsggagsqfeseldcidasqsfrllpqtp
vpvvrgpqtavvvgpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwg
smqiprigqevivsflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpa
nfneirmedkkgaeqlyihaernqdnlvendaslsvghdrnksighdelarignnrtrav
klndtllvggaksdsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgng
nidtggrldlnsggasevdakgkgvqgtidgqvqamfpppakg

    Sequence, based on observed residues (ATOM records):
    >6h3nA (A:)
rlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslslelpg
gsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikqvfrn
lgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvlsdayg
ahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlevrsni
arphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghlfrls
gyprddqnreylvvgaeyrvvqelsqfeseldcidasqsfrllpqtpvpvvrgpqtavvv
gpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwgsmqiprigqeviv
sflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpanfneirmedkkga
eqlyihaernqdnlvendaslsvghdrnksighdelarignnrtravklndtllvggaks
dsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgngnidtggrldlnsg
gasevdakgkgvqgtidgqvqamfppp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6h3nB (B:)
mqltrlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslsl
elpggsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikq
vfrnlgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvls
daygahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlev
rsniarphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghl
frlsgyprddqnreylvvgaeyrvvqelyetgsggagsqfeseldcidasqsfrllpqtp
vpvvrgpqtavvvgpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwg
smqiprigqevivsflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpa
nfneirmedkkgaeqlyihaernqdnlvendaslsvghdrnksighdelarignnrtrav
klndtllvggaksdsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgng
nidtggrldlnsggasevdakgkgvqgtidgqvqamfpppakg

    Sequence, based on observed residues (ATOM records):
    >6h3nB (B:)
rlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslslelpg
gsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikqvfrn
lgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvlsdayg
ahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlevrsni
arphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghlfrls
gyprddqnreylvvgaeyrvvqelsqfeseldcidasqsfrllpqtpvpvvrgpqtavvv
gpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwgsmqiprigqeviv
sflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpanfneirmedkkga
eqlyihaernqdnlvendaslsvghdrnksighdelarignnrtravklndtllvggaks
dsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgngnidtggrldlnsg
gasevdakgkgvqgtidgqvqamfppp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6h3nC (C:)
mqltrlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslsl
elpggsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikq
vfrnlgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvls
daygahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlev
rsniarphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghl
frlsgyprddqnreylvvgaeyrvvqelyetgsggagsqfeseldcidasqsfrllpqtp
vpvvrgpqtavvvgpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwg
smqiprigqevivsflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpa
nfneirmedkkgaeqlyihaernqdnlvendaslsvghdrnksighdelarignnrtrav
klndtllvggaksdsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgng
nidtggrldlnsggasevdakgkgvqgtidgqvqamfpppakg

    Sequence, based on observed residues (ATOM records):
    >6h3nC (C:)
rlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslslelpg
gsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikqvfrn
lgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvlsdayg
ahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlevrsni
arphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghlfrls
gyprddqnreylvvgaeyrvvqelsqfeseldcidasqsfrllpqtpvpvvrgpqtavvv
gpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwgsmqiprigqeviv
sflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpanfneirmedkkga
eqlyihaernqdnlvendaslsvghdrnksighdelarignnrtravklndtllvggaks
dsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgngnidtggrldlnsg
gasevdakgkgvqgtidgqvqamfppp