PDB entry 6h3l

View 6h3l on RCSB PDB site
Description: structure of vgrg1 in the type vi secretion "pre-firing" vgrg1-tse6- eagt6-ef-tu-tsi6 complex
Deposited on 2018-07-19, released 2018-09-12
The last revision was dated 2018-10-03, with a file datestamp of 2018-09-28.
Experiment type: EM
Resolution: 4.2 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VgrG1
    Species: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) [TaxId:208964]
    Gene: vgrG1, PA0091
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: VgrG1
    Species: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) [TaxId:208964]
    Gene: vgrG1, PA0091
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: VgrG1
    Species: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) [TaxId:208964]
    Gene: vgrG1, PA0091
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6h3lA (A:)
mqltrlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslsl
elpggsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikq
vfrnlgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvls
daygahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlev
rsniarphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghl
frlsgyprddqnreylvvgaeyrvvqelyetgsggagsqfeseldcidasqsfrllpqtp
vpvvrgpqtavvvgpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwg
smqiprigqevivsflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpa
nfneirmedkkgaeqlyihaernqdnlvendaslsvghdrnksighdelarignnrtrav
klndtllvggaksdsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgng
nidtggrldlnsggasevdakgkgvqgtidgqvqamfpppakg

    Sequence, based on observed residues (ATOM records):
    >6h3lA (A:)
rlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslslelpg
gsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikqvfrn
lgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvlsdayg
ahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlevrsni
arphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghlfrls
gyprddqnreylvvgaeyrvvqelsqfeseldcidasqsfrllpqtpvpvvrgpqtavvv
gpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwgsmqiprigqeviv
sflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpanfneirmedkkga
eqlyihaernqdnlvendaslsvghdrnksighdelarignnrtravklndtllvggaks
dsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgngnidtggrldlnsg
gasevdakgkgvqgtidgqvqamfppp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6h3lB (B:)
mqltrlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslsl
elpggsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikq
vfrnlgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvls
daygahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlev
rsniarphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghl
frlsgyprddqnreylvvgaeyrvvqelyetgsggagsqfeseldcidasqsfrllpqtp
vpvvrgpqtavvvgpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwg
smqiprigqevivsflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpa
nfneirmedkkgaeqlyihaernqdnlvendaslsvghdrnksighdelarignnrtrav
klndtllvggaksdsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgng
nidtggrldlnsggasevdakgkgvqgtidgqvqamfpppakg

    Sequence, based on observed residues (ATOM records):
    >6h3lB (B:)
rlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslslelpg
gsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikqvfrn
lgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvlsdayg
ahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlevrsni
arphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghlfrls
gyprddqnreylvvgaeyrvvqelsqfeseldcidasqsfrllpqtpvpvvrgpqtavvv
gpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwgsmqiprigqeviv
sflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpanfneirmedkkga
eqlyihaernqdnlvendaslsvghdrnksighdelarignnrtravklndtllvggaks
dsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgngnidtggrldlnsg
gasevdakgkgvqgtidgqvqamfppp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6h3lC (C:)
mqltrlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslsl
elpggsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikq
vfrnlgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvls
daygahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlev
rsniarphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghl
frlsgyprddqnreylvvgaeyrvvqelyetgsggagsqfeseldcidasqsfrllpqtp
vpvvrgpqtavvvgpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwg
smqiprigqevivsflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpa
nfneirmedkkgaeqlyihaernqdnlvendaslsvghdrnksighdelarignnrtrav
klndtllvggaksdsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgng
nidtggrldlnsggasevdakgkgvqgtidgqvqamfpppakg

    Sequence, based on observed residues (ATOM records):
    >6h3lC (C:)
rlvqvdcplgpdvlllqrmegreelgrlfayelhlvsenpnlpleqllgkpmslslelpg
gsrrffhgivarcsqvaghgqfagyqatlrpwpwlltrtsdcrifqnqsvpeiikqvfrn
lgfsdfedaltrpyreweycvqyretsfdfisrlmeqegiyywfrheqkrhilvlsdayg
ahrspggyasvpyypptlghrerdhffdwqmarevqpgsltlndydfqrpgarlevrsni
arphaaadyplydypgeyvqsqdgeqyarnrieaiqaqhervrlrgvvrgigaghlfrls
gyprddqnreylvvgaeyrvvqelsqfeseldcidasqsfrllpqtpvpvvrgpqtavvv
gpkgeeiwtdqygrvkvhfhwdrhdqsnensscwirvsqawagknwgsmqiprigqeviv
sflegdpdrpiitgrvynaeqtvpyelpanatqsgmksrsskggtpanfneirmedkkga
eqlyihaernqdnlvendaslsvghdrnksighdelarignnrtravklndtllvggaks
dsvtgtylieagaqirlvcgksvvefnadgtinisgsafnlyasgngnidtggrldlnsg
gasevdakgkgvqgtidgqvqamfppp