PDB entry 6h0b

View 6h0b on RCSB PDB site
Description: crystal structure of the human galnac-t4 in complex with udp, manganese and the diglycopeptide 6.
Deposited on 2018-07-08, released 2018-10-10
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polypeptide N-acetylgalactosaminyltransferase 4
    Species: Homo sapiens [TaxId:9606]
    Gene: GALNT4
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Polypeptide N-acetylgalactosaminyltransferase 4
    Species: Homo sapiens [TaxId:9606]
    Gene: GALNT4
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ala-thr-gly-ala-gly-ala-gly-ala-gly-thr-thr-pro-gly-pro-gly
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6H0B (Start-15)
  • Heterogens: EDO, MN, UDP, GOL, NGA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6h0bA (A:)
mavrwtwagksclllafltvayifvellvstfhasagagrarelgsrrlsdlqkntedls
rplykkppadsralgewgkasklqlnedelkqqeelieryainiylsdrislhrhiedkr
myecksqkfnyrtlpttsviiafyneawstllrtihsvletspavllkeiilvddlsdrv
ylktqletyisnldrvrlirtnkreglvrarligatfatgdvltfldchcecnsgwlepl
lerigrdetavvcpvidtidwntfefymqigepmiggfdwrltfqwhsvpkqerdrrisr
idpirsptmagglfavskkyfqylgtydtgmevwggenlelsfrvwqcggkleihpcshv
ghvfpkrapyarpnflqntaraaevwmdeykehfynrnpparkeaygdiserkllrerlr
cksfdwylknvfpnlhvpedrpgwhgairsrgissecldynspdnnptganlslfgchgq
ggnqffeytsnkeirfnsvtelcaevpeqknyvgmqncpkdgfpvpaniiwhfkedgtif
hphsglclsayrtpegrpdvqmrtcdaldknqiwsfek

    Sequence, based on observed residues (ATOM records):
    >6h0bA (A:)
dlsrplykkppadsralgewgkasklqlnedelkqqeelieryainiylsdrislhrhie
dkrmyecksqkfnyrtlpttsviiafyneawstllrtihsvletspavllkeiilvddls
drvylktqletyisnldrvrlirtnkreglvrarligatfatgdvltfldchcecnsgwl
epllerigrdetavvcpvidtidwntfefymqigepmiggfdwrltfqwhsvpkqerdrr
isridpirsptmagglfavskkyfqylgtydtgmevwggenlelsfrvwqcggkleihpc
shvghvfpkrnflqntaraaevwmdeykehfynrnpparkeaygdiserkllrerlrcks
fdwylknvfpnlhvpedrpgwhgairsrgissecldynspdnnptganlslfgchgqggn
qffeytsnkeirfnsvtelcaevpeqknyvgmqncpkdgfpvpaniiwhfkedgtifhph
sglclsayrtpegrpdvqmrtcdaldknqiwsfek

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6h0bB (B:)
mavrwtwagksclllafltvayifvellvstfhasagagrarelgsrrlsdlqkntedls
rplykkppadsralgewgkasklqlnedelkqqeelieryainiylsdrislhrhiedkr
myecksqkfnyrtlpttsviiafyneawstllrtihsvletspavllkeiilvddlsdrv
ylktqletyisnldrvrlirtnkreglvrarligatfatgdvltfldchcecnsgwlepl
lerigrdetavvcpvidtidwntfefymqigepmiggfdwrltfqwhsvpkqerdrrisr
idpirsptmagglfavskkyfqylgtydtgmevwggenlelsfrvwqcggkleihpcshv
ghvfpkrapyarpnflqntaraaevwmdeykehfynrnpparkeaygdiserkllrerlr
cksfdwylknvfpnlhvpedrpgwhgairsrgissecldynspdnnptganlslfgchgq
ggnqffeytsnkeirfnsvtelcaevpeqknyvgmqncpkdgfpvpaniiwhfkedgtif
hphsglclsayrtpegrpdvqmrtcdaldknqiwsfek

    Sequence, based on observed residues (ATOM records):
    >6h0bB (B:)
dlsrplykkppadsralgewgkasklqlnedelkqqeelieryainiylsdrislhrhie
dkrmyecksqkfnyrtlpttsviiafyneawstllrtihsvletspavllkeiilvddls
drvylktqletyisnldrvrlirtnkreglvrarligatfatgdvltfldchcecnsgwl
epllerigrdetavvcpvidtidwntfefymqigepmiggfdwrltfqwhsvpkqerdrr
isridpirsptmagglfavskkyfqylgtydtgmevwggenlelsfrvwqcggkleihpc
shvghvfpkrapyarpnflqntaraaevwmdeykehfynrnpparkeaygdiserkllre
rlrcksfdwylknvfpnlhvpedrpgwhgairsrgissecldynspdnnptganlslfgc
hgqggnqffeytsnkeirfnsvtelcaevpeqknyvgmqncpkdgfpvpaniiwhfkedg
tifhphsglclsayrtpegrpdvqmrtcdaldknqiwsfek

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6h0bF (F:)
gatgagagagttpgpg

    Sequence, based on observed residues (ATOM records):
    >6h0bF (F:)
atgagagagttpgpg